Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq216 141 1e-28
>seq216
Length=3482710
Score = 141 bits (156), Expect = 1e-28
Identities = 212/301 (70%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| | || || || || ||||||||||| || ||||||||||| || |
Sbjct 700352 AACACTGAAGGTGGTAAAAGGGCAACCCTTCACATTATTGCAGATGAGGGACTGGATTGA 700293
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | || ||||| || || || || ||||| ||||||||||| |
Sbjct 700292 GGCAGTATTTATGATTTTGAAGCCTACTTCTCCACCAAAAGTGCTAGGTTTCCAGTAGTC 700233
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| || || || || |||| || ||||| | ||| || || || || | || |
Sbjct 700232 AGGAGAACAAATAGGATTACCCATAAGTCCTTTTAGGGAGAATGGCGCTCCAATTTCTAC 700173
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| ||||||| ||||||||| | || || |||||||| || | || ||| || ||
Sbjct 700172 CATGGTCTCACCAAAGATGGCATCTGGTCGTGGTTTTTCTACCAGGAGAGCAGGATACAG 700113
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | || || | ||| ||||| ||||||||||| ||||| || |||||||| ||
Sbjct 700112 CTCCATGGCATCAATGTCACCATAAGCTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCC 700053
Query 9175 T 9175
|
Sbjct 700052 T 700052
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| || || ||||| |||| ||| |||
Sbjct 696589 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCTACAGGAGGGAGAGCTCTGGTA 696530
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| || || || || ||||| ||||||||||| ||||||||||| | | |||||
Sbjct 696529 TAGTAAGAGAGGTTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 696470
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | || ||||||
Sbjct 696469 GGTGGACTCTCAATCAAATGTGATCTGGCT 696440
Score = 104 bits (114), Expect = 3e-17
Identities = 186/270 (69%), Gaps = 4/270 (1%)
Strand=Plus/Minus
Query 9452 TGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGA 9511
|||| |||||||| || |||| | ||| || | | | ||||||||||||||| | ||
Sbjct 699188 TGAAAGATTCAACAAACTGGGTAAGTCCATGTTCCAGTAAGATGGAATTGTTGTAGAGGA 699129
Query 9512 AGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCC 9571
| |||| ||| || | | || | || ||| ||||||| || | |||||
Sbjct 699128 ACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGAAGGGTGTCAGGCATAAGGGGATGCC 699069
Query 9572 AGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACC 9629
|| | || ||||| |||||||| | || || ||||| |||||||| || | |||
Sbjct 699068 AGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGGTTTTGGTACTGGAATTGCTGGT--T 699011
Query 9630 GAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689
||| || | ||| || ||||| | |||| ||||| || || || | ||||| |||||
Sbjct 699010 GAAAAGCAGCTCTGGATCAAACTTGAGCTTGAAGTTATAGCCACTCAAATGCTGTACATA 698951
Query 9690 CTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | || | ||| ||||||||||| ||
Sbjct 698950 GTCTTCAATCACAATCTTAATGGTTTCTCC 698921
Score = 93.3 bits (102), Expect = 6e-14
Identities = 129/178 (72%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
||||||||| || ||||||||| | |||||||| |||||| | ||| ||| | ||
Sbjct 697191 TCTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTCTTGAA 697132
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|| || || |||||||| || | || || || ||||||| || ||||||||||||||
Sbjct 697131 GAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGGGGATC 697072
Query 10241 GGGGAT-AAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | ||||||| ||||||| | | ||||||| || ||
Sbjct 697071 AGGAATGAACTTTTTTCTTAGGAGAAACTTT-TCCACAACTTCTTTTGAATCAGGAAG 697015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723675502580200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |