Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq216 141 1e-28 >seq216 Length=3482710 Score = 141 bits (156), Expect = 1e-28 Identities = 212/301 (70%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || || || ||||||||||| || ||||||||||| || | Sbjct 700352 AACACTGAAGGTGGTAAAAGGGCAACCCTTCACATTATTGCAGATGAGGGACTGGATTGA 700293 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| ||||||||||| | Sbjct 700292 GGCAGTATTTATGATTTTGAAGCCTACTTCTCCACCAAAAGTGCTAGGTTTCCAGTAGTC 700233 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || |||| || ||||| | ||| || || || || | || | Sbjct 700232 AGGAGAACAAATAGGATTACCCATAAGTCCTTTTAGGGAGAATGGCGCTCCAATTTCTAC 700173 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | || || |||||||| || | || ||| || || Sbjct 700172 CATGGTCTCACCAAAGATGGCATCTGGTCGTGGTTTTTCTACCAGGAGAGCAGGATACAG 700113 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 700112 CTCCATGGCATCAATGTCACCATAAGCTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCC 700053 Query 9175 T 9175 | Sbjct 700052 T 700052 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || ||||| |||| ||| ||| Sbjct 696589 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCTACAGGAGGGAGAGCTCTGGTA 696530 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || || || || || ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 696529 TAGTAAGAGAGGTTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 696470 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 696469 GGTGGACTCTCAATCAAATGTGATCTGGCT 696440 Score = 104 bits (114), Expect = 3e-17 Identities = 186/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 9452 TGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGA 9511 |||| |||||||| || |||| | ||| || | | | ||||||||||||||| | || Sbjct 699188 TGAAAGATTCAACAAACTGGGTAAGTCCATGTTCCAGTAAGATGGAATTGTTGTAGAGGA 699129 Query 9512 AGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCC 9571 | |||| ||| || | | || | || ||| ||||||| || | ||||| Sbjct 699128 ACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGAAGGGTGTCAGGCATAAGGGGATGCC 699069 Query 9572 AGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACC 9629 || | || ||||| |||||||| | || || ||||| |||||||| || | ||| Sbjct 699068 AGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGGTTTTGGTACTGGAATTGCTGGT--T 699011 Query 9630 GAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||| || | ||| || ||||| | |||| ||||| || || || | ||||| ||||| Sbjct 699010 GAAAAGCAGCTCTGGATCAAACTTGAGCTTGAAGTTATAGCCACTCAAATGCTGTACATA 698951 Query 9690 CTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || | ||| ||||||||||| || Sbjct 698950 GTCTTCAATCACAATCTTAATGGTTTCTCC 698921 Score = 93.3 bits (102), Expect = 6e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||||||||| || ||||||||| | |||||||| |||||| | ||| ||| | || Sbjct 697191 TCTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTCTTGAA 697132 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || || || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 697131 GAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGGGGATC 697072 Query 10241 GGGGAT-AAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | ||||||| ||||||| | | ||||||| || || Sbjct 697071 AGGAATGAACTTTTTTCTTAGGAGAAACTTT-TCCACAACTTCTTTTGAATCAGGAAG 697015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723675502580200