Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq635 98.7 2e-15
seq339 84.2 3e-11
>seq635
Length=1382696
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908
||||| || |||| | | || || || | || | ||||||||| || ||||| |
Sbjct 1180144 GTGAATTGGATGGGATAAGCTGCTGGTCTTGTCCTTAAATAGTACATTCCAGTCTTCAAA 1180203
Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968
|||| || ||| ||||| | |||||| || || |||| ||| || || | |||
Sbjct 1180204 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGCTTGCCGTAGTTAGGCTCAGTAATG 1180263
Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028
|| || ||||| ||||||||||| || ||||||| | | || || |||| |||| |
Sbjct 1180264 TGGATATTCAGTGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCAGCTTGAGA 1180323
Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
| || ||||| || || |||||||| |||||
Sbjct 1180324 ACTGTTTTCTGAGAGATTTCCCACACAGTCTT 1180355
>seq339
Length=2552696
Score = 84.2 bits (92), Expect = 3e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969
||| || ||| ||||| | |||||| || || |||| ||| || || || ||||
Sbjct 2059667 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGCTTGCCGTAGTTAGGCTCAGCGATGT 2059608
Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029
| || |||| ||||||||||| || ||||||| | | || || ||||| |||| ||
Sbjct 2059607 GGATATTCAATGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCCGCCATCTTGAGAA 2059548
Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
|| ||||| || || |||||||| |||||
Sbjct 2059547 CTGTTTTCTGAGAGATTTCCCACACAGTCTT 2059517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795097521429680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |