Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq24 136 9e-27 seq412 118 2e-21 seq1416 95.1 3e-14 seq608 95.1 3e-14 seq580 84.2 5e-11 seq41 84.2 5e-11 >seq24 Length=8999101 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||||| || || || ||||||||||| | ||||||||| | || ||| Sbjct 2890506 CGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTA 2890565 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||||||| || || || || ||||| |||||||| ||| ||| ||| Sbjct 2890566 TGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCT 2890625 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||||| || | || |||| | || || || | | Sbjct 2890626 TCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGC 2890685 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| ||||| || Sbjct 2890686 GTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTG 2890723 >seq412 Length=2039319 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| |||| || || |||||||| |||| |||||||||| || ||| | |||||| Sbjct 1106576 CAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATC 1106635 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || || || || | || Sbjct 1106636 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTC-CTGTC 1106694 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || |||| |||||| | | || || || | ||||| || Sbjct 1106695 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 1106754 Query 199597 CTTACCCGTGAGAGTTTTCA 199616 |||||| | || || |||| Sbjct 1106755 CTTACCAATCAGGGTCTTCA 1106774 >seq1416 Length=126746 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| |||| || || |||||||| |||| ||||||||||| || || | | |||| Sbjct 47988 CAGGACCAGGTTCAGGGTGGACTCCTTCTGGAGGTTGTAGTCAGACAGGGTGCGTACATC 48047 Query 199477 TTCC-AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 |||| ||||||||||| || ||||| || | ||||||||| ||| Sbjct 48048 TTCCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 48091 >seq608 Length=1396534 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| ||||| || ||| ||| || |||| ||||||||||| | ||| | |||||||| Sbjct 1124035 GACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 1123976 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || ||||||||| || |||||||| | |||||| || | | ||| ||||| ||||| Sbjct 1123975 CAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTG 1123916 Query 199540 AATCTTTTGCTTCAC 199554 ||||| |||||| Sbjct 1123915 GATCTTGGCCTTCAC 1123901 >seq580 Length=1649027 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | || ||| | ||||||||||||||||| || || || | Sbjct 1583576 CCTTTTGGATGTTGTAGTCCGACAGAGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAA 1583635 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||| ||| ||| ||| Sbjct 1583636 TCAGACGTTGCTGGTCAGGAGGAATGCCT 1583664 >seq41 Length=6870668 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||| | ||| ||||||||||| | ||| | | ||| Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || ||||| | | Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGG--GGATGCCTTC-CTTATC 2879734 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||| |||||| |||| ||| || | | || || |||| ||||| || Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || | || || ||||| || ||||| |||||| Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTG---CATTTT 2879829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178833946073801