Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq24 136 9e-27
seq412 118 2e-21
seq1416 95.1 3e-14
seq608 95.1 3e-14
seq580 84.2 5e-11
seq41 84.2 5e-11
>seq24
Length=8999101
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||||| ||||| || || || ||||||||||| | ||||||||| | || |||
Sbjct 2890506 CGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTA 2890565
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||||||||| || || || || ||||| |||||||| ||| ||| |||
Sbjct 2890566 TGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCT 2890625
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| ||||| ||||| || | || |||| | || || || | |
Sbjct 2890626 TCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGC 2890685
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 2890686 GTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTG 2890723
>seq412
Length=2039319
Score = 118 bits (130), Expect = 2e-21
Identities = 147/200 (74%), Gaps = 1/200 (1%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| |||| || || |||||||| |||| |||||||||| || ||| | ||||||
Sbjct 1106576 CAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATC 1106635
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| || | ||||||||| || || || || | ||
Sbjct 1106636 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTC-CTGTC 1106694
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| |||||| ||| || |||| |||||| | | || || || | ||||| ||
Sbjct 1106695 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 1106754
Query 199597 CTTACCCGTGAGAGTTTTCA 199616
|||||| | || || ||||
Sbjct 1106755 CTTACCAATCAGGGTCTTCA 1106774
>seq1416
Length=126746
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/104 (81%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| |||| || || |||||||| |||| ||||||||||| || || | | ||||
Sbjct 47988 CAGGACCAGGTTCAGGGTGGACTCCTTCTGGAGGTTGTAGTCAGACAGGGTGCGTACATC 48047
Query 199477 TTCC-AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519
|||| ||||||||||| || ||||| || | ||||||||| |||
Sbjct 48048 TTCCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 48091
>seq608
Length=1396534
Score = 95.1 bits (104), Expect = 3e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479
||| ||||| || ||| ||| || |||| ||||||||||| | ||| | ||||||||
Sbjct 1124035 GACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 1123976
Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539
|| ||||||||| || |||||||| | |||||| || | | ||| ||||| |||||
Sbjct 1123975 CAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTG 1123916
Query 199540 AATCTTTTGCTTCAC 199554
||||| ||||||
Sbjct 1123915 GATCTTGGCCTTCAC 1123901
>seq580
Length=1649027
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| | || ||| | ||||||||||||||||| || || || |
Sbjct 1583576 CCTTTTGGATGTTGTAGTCCGACAGAGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAA 1583635
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||||||| ||| ||| |||
Sbjct 1583636 TCAGACGTTGCTGGTCAGGAGGAATGCCT 1583664
>seq41
Length=6870668
Score = 84.2 bits (92), Expect = 5e-11
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || |||| | ||| ||||||||||| | ||| | | |||
Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| | ||||||||| || || ||||| | |
Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGG--GGATGCCTTC-CTTATC 2879734
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||| |||||| |||| ||| || | | || || |||| ||||| ||
Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || | || || ||||| || ||||| ||||||
Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTG---CATTTT 2879829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178833946073801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |