Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-18 seq412 91.5 2e-13 seq24 86.0 7e-12 seq39 84.2 2e-11 >seq41 Length=6870668 Score = 107 bits (118), Expect = 2e-18 Identities = 155/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGC-GCTCGTCGTC 46443 ||||| |||| || ||| | ||| | |||||||| || ||||||| ||| ||| || Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCT-GTCTTC 2879679 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || || | | ||||||||||| || | || ||||| || Sbjct 2879680 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTATCTGG 2879737 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 | |||| ||| | || | | || ||||| | || ||| |||| ||||||||||| Sbjct 2879738 G-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| || || || ||||||||||||||| Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTG 2879830 >seq412 Length=2039319 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || | ||||| | || || ||||||||||| || || Sbjct 1106597 CTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAA 1106656 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||| ||||| |||||| ||||| | Sbjct 1106657 GATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATT 1106715 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| || | ||||| || | |||||||| || || |||| || || Sbjct 1106716 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGTCTT 1106772 >seq24 Length=8999101 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| || ||||| | ||| ||||||||| || |||||||| || ||||| || | || Sbjct 2890514 CAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATC 2890573 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| || || |||| || |||||||| | || | || || || || Sbjct 2890574 TTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATC 2890633 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| || | || | | || || | || || || | ||||||||| Sbjct 2890634 CTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGT 2890693 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || || || || || || || || ||||| ||| Sbjct 2890694 CTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTTG 2890730 >seq39 Length=7040410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||| | ||||||||| | || | || |||||||||| |||||| | Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||| | ||||| || | ||||||||||| || ||||| Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || || ||||| |||||| Sbjct 3825829 GTCTTCACGAAGATCTGCATT 3825809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197399019560