Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq41 107 2e-18
seq412 91.5 2e-13
seq24 86.0 7e-12
seq39 84.2 2e-11
>seq41
Length=6870668
Score = 107 bits (118), Expect = 2e-18
Identities = 155/214 (72%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGC-GCTCGTCGTC 46443
||||| |||| || ||| | ||| | |||||||| || ||||||| ||| ||| ||
Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCT-GTCTTC 2879679
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| || || || | | ||||||||||| || | || ||||| ||
Sbjct 2879680 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTATCTGG 2879737
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
| |||| ||| | || | | || ||||| | || ||| |||| |||||||||||
Sbjct 2879738 G-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||| || || || |||||||||||||||
Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTG 2879830
>seq412
Length=2039319
Score = 91.5 bits (100), Expect = 2e-13
Identities = 127/177 (72%), Gaps = 1/177 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || | ||||| | || || ||||||||||| || ||
Sbjct 1106597 CTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAA 1106656
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||||||| | || | || |||| ||||| |||||| ||||| |
Sbjct 1106657 GATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATT 1106715
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| || | ||||| || | |||||||| || || |||| || ||
Sbjct 1106716 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGTCTT 1106772
>seq24
Length=8999101
Score = 86.0 bits (94), Expect = 7e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
||| || ||||| | ||| ||||||||| || |||||||| || ||||| || | ||
Sbjct 2890514 CAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATC 2890573
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| ||||||||||| || || |||| || |||||||| | || | || || || ||
Sbjct 2890574 TTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATC 2890633
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| || | || | | || || | || || || | |||||||||
Sbjct 2890634 CTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGT 2890693
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| || || || || || || || || ||||| |||
Sbjct 2890694 CTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTTG 2890730
>seq39
Length=7040410
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
||||| || |||| | ||||||||| | || | || |||||||||| |||||| |
Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||| | ||||| || | ||||||||||| || |||||
Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830
Query 46574 GTTTTAACAAAGATTTGCATT 46594
|| || || ||||| ||||||
Sbjct 3825829 GTCTTCACGAAGATCTGCATT 3825809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565197399019560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |