Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq24 107 8e-18 seq42 105 3e-17 seq75 93.3 2e-13 seq501 87.8 7e-12 seq556 86.0 2e-11 >seq24 Length=8999101 Score = 107 bits (118), Expect = 8e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| || || || || || || || || | || Sbjct 2890726 ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCA 2890667 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| || || || ||||| ||||| ||||||||||| || Sbjct 2890666 GATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 2890607 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || |||||||| ||| || |||| || || Sbjct 2890606 CAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAAC 2890547 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| | |||||||| | || || |||||| Sbjct 2890546 ATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTG 2890508 >seq42 Length=7019203 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||||||| ||||||| || || |||||||||||||| || || || ||||| Sbjct 5606539 GTTACTCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAGCGCCAGGCAACC 5606480 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || || ||| | | || || |||||||| Sbjct 5606479 AAAGATGCTGGAACTATTGCTGGATTGAACGTTATGAGGATCATCAATGAACC 5606427 >seq75 Length=5921455 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || ||||| ||||||||||| ||| | |||||||| || Sbjct 3585504 GCCACTAAGGATGCTGGTCAGATAGCTGGATTAAATGTTCTCCGAGTGATTAATGAGCCC 3585563 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || || |||||||| || ||||| |||| |||||| |||| Sbjct 3585564 ACCGCTGCTGCTCTGGCCTATGGTCTAGACAAATCAGAAGA 3585604 >seq501 Length=1755529 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 391140 CAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTT 391199 |||||||| |||||||||||||||||||| | | | |||| ||| | || | || || Sbjct 1647297 CAAGATAAAGAAGGAATTCCTCCTGATCAGCCAAGATTAAATTTTGCTGGCAGACCTCTA 1647356 Query 391200 GAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259 |||||||| | |||||| | || || || | | | ||||| | ||||||||| | || Sbjct 1647357 GAAGATGGGCGTACTTTGTCTGACTACAAGACTCAAAAGGAGTCCACACTTCACCTTGTT 1647416 Query 391260 TTAAGACT 391267 || ||||| Sbjct 1647417 TTGAGACT 1647424 >seq556 Length=1594741 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 391086 ATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGAT 391145 ||| |||| || ||||||||||| |||| ||| | | ||| || || || ||| Sbjct 329661 ATTTCTCTCGAGGTTGAATCATCAGATACCATAAAGAACGTGAAAGCCAAGATCCAGGAT 329602 Query 391146 AAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGAT 391205 || ||||| |||||||||||||| ||| | ||||||| | | |||||||| |||||| Sbjct 329601 AAAGAAGGTATTCCTCCTGATCAGCAAAGACTAATTTTTGCTAGCAAACAACTAGAAGAT 329542 Query 391206 GGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252 || | ||||| || || || ||| | ||||| | ||||||| Sbjct 329541 GGGCGTACTTT----GACTACAAAATTCAAAAGGAGTC--CACTTCA 329501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975571503484724