Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq24 107 8e-18
seq42 105 3e-17
seq75 93.3 2e-13
seq501 87.8 7e-12
seq556 86.0 2e-11
>seq24
Length=8999101
Score = 107 bits (118), Expect = 8e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || ||||| || || || || || || || || | ||
Sbjct 2890726 ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCA 2890667
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | | ||| || || || ||||| ||||| ||||||||||| ||
Sbjct 2890666 GATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 2890607
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | ||||| | || || || || |||||||| ||| || |||| || ||
Sbjct 2890606 CAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAAC 2890547
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268
||| | ||||| | |||||||| | || || ||||||
Sbjct 2890546 ATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTG 2890508
>seq42
Length=7019203
Score = 105 bits (116), Expect = 3e-17
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| |||||||| ||||||| || || |||||||||||||| || || || |||||
Sbjct 5606539 GTTACTCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAGCGCCAGGCAACC 5606480
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| || || ||| | | || || ||||||||
Sbjct 5606479 AAAGATGCTGGAACTATTGCTGGATTGAACGTTATGAGGATCATCAATGAACC 5606427
>seq75
Length=5921455
Score = 93.3 bits (102), Expect = 2e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| ||||| ||||| || || || ||||| ||||||||||| ||| | |||||||| ||
Sbjct 3585504 GCCACTAAGGATGCTGGTCAGATAGCTGGATTAAATGTTCTCCGAGTGATTAATGAGCCC 3585563
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467
|| || |||||||| || ||||| |||| |||||| ||||
Sbjct 3585564 ACCGCTGCTGCTCTGGCCTATGGTCTAGACAAATCAGAAGA 3585604
>seq501
Length=1755529
Score = 87.8 bits (96), Expect = 7e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 391140 CAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTT 391199
|||||||| |||||||||||||||||||| | | | |||| ||| | || | || ||
Sbjct 1647297 CAAGATAAAGAAGGAATTCCTCCTGATCAGCCAAGATTAAATTTTGCTGGCAGACCTCTA 1647356
Query 391200 GAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259
|||||||| | |||||| | || || || | | | ||||| | ||||||||| | ||
Sbjct 1647357 GAAGATGGGCGTACTTTGTCTGACTACAAGACTCAAAAGGAGTCCACACTTCACCTTGTT 1647416
Query 391260 TTAAGACT 391267
|| |||||
Sbjct 1647417 TTGAGACT 1647424
>seq556
Length=1594741
Score = 86.0 bits (94), Expect = 2e-11
Identities = 120/167 (72%), Gaps = 6/167 (4%)
Strand=Plus/Minus
Query 391086 ATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGAT 391145
||| |||| || ||||||||||| |||| ||| | | ||| || || || |||
Sbjct 329661 ATTTCTCTCGAGGTTGAATCATCAGATACCATAAAGAACGTGAAAGCCAAGATCCAGGAT 329602
Query 391146 AAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGAT 391205
|| ||||| |||||||||||||| ||| | ||||||| | | |||||||| ||||||
Sbjct 329601 AAAGAAGGTATTCCTCCTGATCAGCAAAGACTAATTTTTGCTAGCAAACAACTAGAAGAT 329542
Query 391206 GGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252
|| | ||||| || || || ||| | ||||| | |||||||
Sbjct 329541 GGGCGTACTTT----GACTACAAAATTCAAAAGGAGTC--CACTTCA 329501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975571503484724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |