Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq409 129 4e-24 seq503 102 6e-16 seq578 100 2e-15 seq42 87.8 1e-11 >seq409 Length=2050159 Score = 129 bits (142), Expect = 4e-24 Identities = 362/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||| |||||||| || | | | || | || ||| |||||||| Sbjct 860429 GCACCATAAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTCAATTCTTTCCCATTGAAG 860370 Query 517670 AAATT-TGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 || | || || ||| | ||| | ||| || ||||||| || || || || || |||| Sbjct 860369 AAGTCCTGTAA-AAGCT-TCTGAATCTTGGGGATACGAGTAGAACCACCCACCAAGACAA 860312 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 | ||||| | ||| ||||| || || || | |||| | ||||||| || || || | Sbjct 860311 TGTCATGAATCTGGGATTTGTCAAGCTTGGCATCCCGAAGGGCTTTTTCTACTGGATCCA 860252 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | | |||||||| | | | |||||| ||| || | |||| | | | Sbjct 860251 GGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAATCGGGCCCGGGTAATGGAGGTGT 860192 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 ||||||||||||| ||| ||||||| |||||| | | || || ||||| | Sbjct 860191 AGAAATCAATTCCTTCATACAGGGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGAGA 860132 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTG 517965 ||| ||| || ||||||||||| || || | ||| | || | || || ||| | | Sbjct 860131 GTGTACGCTTTGCACGTTCACAAGCAGTACGTAGGCGGCGGACAGCCCTCTTGTT--CTC 860074 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 518023 | | | || | || | || | ||||| ||| ||| | | ||| | || | ||| Sbjct 860073 ACTTATGTCCTTCTTGTGCTTGCGTTTGAATTCTGCAATAAA--ATGGTTGACCATTCGA 860016 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| ||||| || ||||| | || | ||||| |||| | | |||| || | Sbjct 860015 TTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCTGCTGTAGATTTGACTTCAAAGATC 859956 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 |||||||||| || | || | |||||| || || || |||| ||||| || || Sbjct 859955 CCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCTCCTCCCAAGTCAAAGATCAGC 859896 Query 518144 ACATT 518148 ||||| Sbjct 859895 ACATT 859891 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | ||||| |||| |||||||||||||| |||||||| ||||| | ||| Sbjct 859787 TTTTTATCCAAGCCATAAGCAATGGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACA 859728 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| | || |||||||| || || || | ||| || || || || ||| Sbjct 859727 TTCAGACCAGCAATAGTCCCAGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAT 859668 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | ||||||| Sbjct 859667 GCAGGTACTGTGACCACGGCAT 859646 >seq503 Length=1718272 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| |||||||| |||||||||||||| ||| | || || ||| | Sbjct 794662 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACATTGGCTGTTTCGGGCCTTGGT 794603 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| || |||||||||||||||||| | | |||||| | Sbjct 794602 GTGGTTGGCAGAGACAAATATGGGGTATTCCCACTTAGAGGAAAAATACTCAATGTTCGA 794543 Query 635561 GATGCTAGTCCTAA 635574 || ||| || ||| Sbjct 794542 GAAGCTTCTCATAA 794529 >seq578 Length=1461024 Score = 100 bits (110), Expect = 2e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 366994 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 367053 || ||||| || ||||||||||| ||||| ||||||||| | || || | || ||| Sbjct 1101748 GTCGTAGCTACCATAGCATTTGGAATGGGCATTAATAAAGCCGACATTCGTAAAGTCATT 1101807 Query 367054 CATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 367113 |||||||| ||||| ||| | || ||| ||||| || || ||||||||||| || ||| Sbjct 1101808 CATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGT 1101867 Query 367114 GATGG 367118 ||||| Sbjct 1101868 GATGG 1101872 >seq42 Length=7019203 Score = 87.8 bits (96), Expect = 1e-11 Identities = 205/307 (67%), Gaps = 18/307 (6%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAATT 517157 |||| ||||||||| | | ||||| | | || ||| || || | || |||| | Sbjct 5603638 TTTCCAATTCATTTCTTGTATCAATACGCTCCTTGAGCTTTTTGTCCTCCTCAGCAAACT 5603697 Query 517158 CTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT----- 517212 | || || ||| |||||| ||||||| |||||| | || |||||| Sbjct 5603698 TCTCGGCATCATTAACCATTCTTTCAATTT---CTTCAGG---TGTTAGGCGATTCTGGT 5603751 Query 517213 -ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 517268 ||| ||||| || || || || |||||| ||| ||| || |||| ||||| Sbjct 5603752 CATTGGTAATTGTGATCTTGTT---TTTGTTGCCTGTACCTTTGTCTTCGGCTGTCACTC 5603808 Query 517269 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 517328 | ||||| ||||| |||| | ||||| ||||||||||| || |||||||| | ||| Sbjct 5603809 TGAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 5603868 Query 517329 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 517388 |||| || || || || | ||| |||||||| | ||| ||||| || | || Sbjct 5603869 CAGGAGGAATTCCAGTCAGGTCAAAAGTTCCCAGGAGGTGATTGTCTTTTGTCAGGGGTC 5603928 Query 517389 GTTCACC 517395 ||||||| Sbjct 5603929 GTTCACC 5603935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780534436024918