Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq1357 87.8 1e-12 seq1522 86.0 5e-12 >seq1357 Length=230225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 822 GGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGTTG 881 |||||||| | || || ||||||| | ||||| || |||||||||| || || Sbjct 186928 GGTCCAGGAGCGCAGGTCGTCATTCAGGGCGATGTAATCAGCGCCATCATAGCTGTGCTG 186869 Query 882 ACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGGAG 941 || ||||||||| |||||| | ||||| |||||||| | |||||||||||| | ||| Sbjct 186868 ACTGTAGCCTCGGAGGAGGCTGCCATCTGGCCCCACGTCGCAGCCGGACATCACCTTGAG 186809 Query 942 GGTATG 947 ||| || Sbjct 186808 GGTGTG 186803 >seq1522 Length=110136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 779 CTTCTAATTTCCTTTTAGAAATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGAT 838 |||| | || || || || ||||| | | |||||| |||||||||| || || | Sbjct 34104 CTTCCCACTTGCTCTTGGAGATTTGCGCCGCCATGTCCGCCGCGGTCCAGGAGCTCAGGT 34163 Query 839 CTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGA 898 | || ||||| | | ||||| |||||||||||||| | || ||||| | || |||| Sbjct 34164 CCTCGTTCAAGGCCACATAGTCGGTGCCATCATAGGCCAGCTGCCAGTATGCGCGGAGGA 34223 Query 899 GGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGGA 940 | ||| || |||||||| | |||||| ||||| | |||| Sbjct 34224 AGTGTCCCTCGGGCCCCACTTCGCAGCCGTACATCAACTGGA 34265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397719069702168