Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq24 145 2e-29
seq501 100 6e-16
seq802 84.2 5e-11
>seq24
Length=8999101
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||||||||| ||||| |||||||| |||||||| ||||| || | ||||| |
Sbjct 2890509 AGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGC 2890568
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| |||||||| || || || || || ||||| ||||| |||||||||||||||
Sbjct 2890569 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCT 2890628
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || || || ||||| || || || || || || || || ||
Sbjct 2890629 TTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTG 2890688
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || | || || ||||| | |||||
Sbjct 2890689 ATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq501
Length=1755529
Score = 100 bits (110), Expect = 6e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 194921 TGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC 194980
|||||||||||||||||||||| |||||||| |||||| | ||||| || | | ||| |
Sbjct 1647426 TGAGTCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGAGTCTTGTAGTCAGACAAAGTAC 1647367
Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040
||||||||| || | | || || || | | || | | || || |||||||| ||||
Sbjct 1647366 GCCCATCTTCTAGAGGTCTGCCAGCAAAATTTAATCTTGGCTGATCAGGAGGAATTCCTT 1647307
Query 195041 CTTTGTCTTG 195050
|||| |||||
Sbjct 1647306 CTTTATCTTG 1647297
>seq802
Length=919857
Score = 84.2 bits (92), Expect = 5e-11
Identities = 153/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||||||||| ||||| |||||||| |||||||| || || | | ||||| |
Sbjct 2890 AGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACAGAGTAGAC 2831
Query 194983 CCATCTTCGAGCTGCTTACCTGC-GAAGATAAGTCGTTGTTGGT---CTGGAGGAATGCC 195038
|| |||| ||||| | || || || || |||| ||| |||| ||||||||| |
Sbjct 2830 CCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGAGGAATGTC 2771
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||| || | || || || || ||||| | || || || ||| || || ||
Sbjct 2770 TTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCGACCTCTAG 2711
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || | || || | ||| | |||||
Sbjct 2710 TGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109399109002901
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |