Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq24 145 2e-29 seq501 100 6e-16 seq802 84.2 5e-11 >seq24 Length=8999101 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||||||| ||||| |||||||| |||||||| ||||| || | ||||| | Sbjct 2890509 AGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGC 2890568 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || || || || ||||| ||||| ||||||||||||||| Sbjct 2890569 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCT 2890628 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || || || ||||| || || || || || || || || || Sbjct 2890629 TTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTG 2890688 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | ||||| Sbjct 2890689 ATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq501 Length=1755529 Score = 100 bits (110), Expect = 6e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 194921 TGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC 194980 |||||||||||||||||||||| |||||||| |||||| | ||||| || | | ||| | Sbjct 1647426 TGAGTCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGAGTCTTGTAGTCAGACAAAGTAC 1647367 Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 ||||||||| || | | || || || | | || | | || || |||||||| |||| Sbjct 1647366 GCCCATCTTCTAGAGGTCTGCCAGCAAAATTTAATCTTGGCTGATCAGGAGGAATTCCTT 1647307 Query 195041 CTTTGTCTTG 195050 |||| ||||| Sbjct 1647306 CTTTATCTTG 1647297 >seq802 Length=919857 Score = 84.2 bits (92), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||||||| ||||| |||||||| |||||||| || || | | ||||| | Sbjct 2890 AGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACAGAGTAGAC 2831 Query 194983 CCATCTTCGAGCTGCTTACCTGC-GAAGATAAGTCGTTGTTGGT---CTGGAGGAATGCC 195038 || |||| ||||| | || || || || |||| ||| |||| ||||||||| | Sbjct 2830 CCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGAGGAATGTC 2771 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| || | || || || || ||||| | || || || ||| || || || Sbjct 2770 TTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCGACCTCTAG 2711 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | || || | ||| | ||||| Sbjct 2710 TGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109399109002901