Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq409 125 6e-23
seq556 96.9 3e-14
seq42 96.9 3e-14
seq24 96.9 3e-14
>seq409
Length=2050159
Score = 125 bits (138), Expect = 6e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || ||||| ||||| || |||||||| |||||||| |||||
Sbjct 859639 GTTACCAATGCCGTGGTCACAGTACCTGCATACTTCAATGACTCTCAACGTCAGGCTACC 859698
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
||||||||||| ||||||||| || ||||| ||| | || || ||||| || ||||||
Sbjct 859699 AAAGATGCTGGGACTATTGCTGGTCTGAATGTACTTAGAATCATTAATGAGCCAACTGCT 859758
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
||||| |||| ||||| | ||||||
Sbjct 859759 GCTGCCATTGCTTATGGCTTGGATAAA 859785
Score = 111 bits (122), Expect = 1e-18
Identities = 233/345 (68%), Gaps = 2/345 (1%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||| | || || ||| | |||||||| ||| | || || || | || || || | ||
Sbjct 860086 GCTGTCCGCCGCCTACGTACTGCTTGTGAACGTGCAAAGCGTACACTCTCTTCCAGCACC 860145
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| ||||||| | ||||| | | ||| |||||||||| | || | ||| |
Sbjct 860146 CAGGCCAGTATTGAAATTGATTCCCTGTATGAAGGAATTGATTTCTACACCTCCATTACC 860205
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
||||| ||||||||| | | |||| | || | || | || |||||||||
Sbjct 860206 CGGGCCCGATTTGAAGAATTGAATGCTGACTTGTTCCGTGGCACCCTGGATCCAGTAGAA 860265
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
||| | | ||| | ||| |||| |||||| | | ||||| ||||| | || |||
Sbjct 860266 AAAGCCCTTCGGGATGCCAAGCTTGACAAATCCCAGATTCATGACATTGTCTTGGTGGGT 860325
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAA 552193
|| ||||| | || || || |||| | | ||| || ||| || |||||| ||| |
Sbjct 860326 GGTTCTACTCGTATCCCCAAGATTCAGAAGCTTTTACAGGACTTCTT-CAATGGGAAAGA 860384
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238
||| || | || | || || ||||||||||| || ||||||||
Sbjct 860385 ATTGAACAAGAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGC 860429
>seq556
Length=1594741
Score = 96.9 bits (106), Expect = 3e-14
Identities = 97/125 (78%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325
||||||||||| | ||| |||| ||| ||||| ||| ||| | ||||||
Sbjct 329495 ACAAGATGAAGTGGACTCCTTTTG--AATTTTGTAGTCAA----AGTACGCCCATCTTCT 329548
Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385
|||||||| | |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 329549 AGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGG 329608
Query 563386 ATTTT 563390
|| ||
Sbjct 329609 ATCTT 329613
>seq42
Length=7019203
Score = 96.9 bits (106), Expect = 3e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||||||| | ||||||||||| ||||| ||||| | || || || || ||
Sbjct 5606539 GTTACTCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAGCGCCAGGCAACC 5606480
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| |||||||||| | || ||| | | || |||||||||||
Sbjct 5606479 AAAGATGCTGGAACTATTGCTGGATTGAACGTTATGAGGATCATCAATGAACC 5606427
>seq24
Length=8999101
Score = 96.9 bits (106), Expect = 3e-14
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
||||||||||| || ||| |||| ||| ||||| || | ||||| |||||
Sbjct 2890518 ACAAGATGAAGTGTGGACTCCTTTTG--AATGTTGTAGTCCGACAGAGTATGCCCATCTT 2890575
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || |||||||| || | |||||| ||||||||||| ||||||||||| |
Sbjct 2890576 CCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCT 2890635
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||| || ||| || ||||| | | | ||||| || | || |
Sbjct 2890636 GGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCT 2890695
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||||| || || || |||||||| |||||
Sbjct 2890696 TCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028989111188470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |