Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq409 125 6e-23 seq556 96.9 3e-14 seq42 96.9 3e-14 seq24 96.9 3e-14 >seq409 Length=2050159 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| ||||| || |||||||| |||||||| ||||| Sbjct 859639 GTTACCAATGCCGTGGTCACAGTACCTGCATACTTCAATGACTCTCAACGTCAGGCTACC 859698 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| ||||||||| || ||||| ||| | || || ||||| || |||||| Sbjct 859699 AAAGATGCTGGGACTATTGCTGGTCTGAATGTACTTAGAATCATTAATGAGCCAACTGCT 859758 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| | |||||| Sbjct 859759 GCTGCCATTGCTTATGGCTTGGATAAA 859785 Score = 111 bits (122), Expect = 1e-18 Identities = 233/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | || || ||| | |||||||| ||| | || || || | || || || | || Sbjct 860086 GCTGTCCGCCGCCTACGTACTGCTTGTGAACGTGCAAAGCGTACACTCTCTTCCAGCACC 860145 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| ||||||| | ||||| | | ||| |||||||||| | || | ||| | Sbjct 860146 CAGGCCAGTATTGAAATTGATTCCCTGTATGAAGGAATTGATTTCTACACCTCCATTACC 860205 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| ||||||||| | | |||| | || | || | || ||||||||| Sbjct 860206 CGGGCCCGATTTGAAGAATTGAATGCTGACTTGTTCCGTGGCACCCTGGATCCAGTAGAA 860265 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 ||| | | ||| | ||| |||| |||||| | | ||||| ||||| | || ||| Sbjct 860266 AAAGCCCTTCGGGATGCCAAGCTTGACAAATCCCAGATTCATGACATTGTCTTGGTGGGT 860325 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAA 552193 || ||||| | || || || |||| | | ||| || ||| || |||||| ||| | Sbjct 860326 GGTTCTACTCGTATCCCCAAGATTCAGAAGCTTTTACAGGACTTCTT-CAATGGGAAAGA 860384 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 ||| || | || | || || ||||||||||| || |||||||| Sbjct 860385 ATTGAACAAGAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGC 860429 >seq556 Length=1594741 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/125 (78%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| | ||| |||| ||| ||||| ||| ||| | |||||| Sbjct 329495 ACAAGATGAAGTGGACTCCTTTTG--AATTTTGTAGTCAA----AGTACGCCCATCTTCT 329548 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 |||||||| | |||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 329549 AGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGG 329608 Query 563386 ATTTT 563390 || || Sbjct 329609 ATCTT 329613 >seq42 Length=7019203 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||||||| | ||||||||||| ||||| ||||| | || || || || || Sbjct 5606539 GTTACTCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAGCGCCAGGCAACC 5606480 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | || ||| | | || ||||||||||| Sbjct 5606479 AAAGATGCTGGAACTATTGCTGGATTGAACGTTATGAGGATCATCAATGAACC 5606427 >seq24 Length=8999101 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||||||| || ||| |||| ||| ||||| || | ||||| ||||| Sbjct 2890518 ACAAGATGAAGTGTGGACTCCTTTTG--AATGTTGTAGTCCGACAGAGTATGCCCATCTT 2890575 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || |||||||| || | |||||| ||||||||||| ||||||||||| | Sbjct 2890576 CCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCT 2890635 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||| || ||| || ||||| | | | ||||| || | || | Sbjct 2890636 GGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCT 2890695 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || || || |||||||| ||||| Sbjct 2890696 TCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028989111188470