Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq602 257 2e-63 seq30 255 7e-63 seq418 248 1e-60 seq92 111 2e-19 seq446 107 2e-18 >seq602 Length=1640730 Score = 257 bits (284), Expect = 2e-63 Identities = 420/601 (70%), Gaps = 3/601 (0%) Strand=Plus/Plus Query 37160 ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || ||| |||| ||| || |||||||||||||| | || |||||||| || || | | | Sbjct 122437 ATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGC 122495 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 ||| ||||| || | || ||||| || |||| ||| || | ||| ||||| | |||||| Sbjct 122496 ATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAA 122555 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 ||| | ||||||||| || ||||| ||||||||||| ||||| | || | || | || Sbjct 122556 AGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGT 122615 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 | | || |||||| | | |||||||||||| || ||||| || Sbjct 122616 GGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCAT 122675 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 ||| ||||| || || ||||| || | | |||| || | | || |||||||| || Sbjct 122676 TGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGAT 122735 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | ||| |||||||||||||| || ||||| || || ||||| || ||||| ||||| Sbjct 122736 GAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACA 122795 Query 37520 CCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||| | |||| ||||| || | ||||| ||| | ||||||||||| |||| Sbjct 122796 GCAGGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTA 122854 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTG 37638 | |||||||| || || || |||||||| |||| |||||||| ||| || ||| | Sbjct 122855 TTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTT 122914 Query 37639 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAAC 37698 | | ||| | | || || || || | || || || ||| | |||||||| Sbjct 122915 TCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATG 122974 Query 37699 TTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAA 37758 ||| || ||||||||| ||| ||||||| | || || ||||| || |||| Sbjct 122975 AGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAA 123034 Query 37759 A 37759 | Sbjct 123035 A 123035 >seq30 Length=8517879 Score = 255 bits (282), Expect = 7e-63 Identities = 576/849 (68%), Gaps = 20/849 (2%) Strand=Plus/Minus Query 36798 aaataaaaatattatttttccttcattt--tttaaaaatcttcatctaacgtaaatttta 36855 ||| |||||||| | |||||| || |||| || || |||| || ||||| Sbjct 2592043 AAAAAAAAATATCAGCACACCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAGT 2591984 Query 36856 tttcCTTATTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAA 36915 | ||| | ||| ||| || ||||| | ||||| || || | || |||| ||| Sbjct 2591983 TGTCCGTTGAACTTGACATCACACCCATCCTCTGATACTCGCCTAGTC-TCTTCTTAAAG 2591925 Query 36916 AATTT-GTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTA 36974 || || || || ||||| | ||| || || |||||||| ||||||||||| | || | Sbjct 2591924 AAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTC--TCTACTC 2591867 Query 36975 TATATAG--TACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT 37032 | | | | || | | ||| | || || || || || ||||| ||||| | Sbjct 2591866 TGAAAACCTTGCTGAAGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACT 2591807 Query 37033 TACACATTA--GTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAA 37089 ||||| || || ||| || || || || || ||||| | || | | ||| ||| Sbjct 2591806 GCTTCATTAAAGTGCA--GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAA 2591749 Query 37090 ATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTG 37146 | | || |||| | ||||||| || |||||| | | ||| ||| || | | Sbjct 2591748 CTCCTGTT-CTATCCTGACAGCATTGACAATTATATTT-CTCTGACTCTCTGCTCCGAAG 2591691 Query 37147 GGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTC 37206 | || | | || ||| |||| |||||| |||||||||||||| | || ||||||| Sbjct 2591690 GTTTATGTAGCAGATGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTC 2591631 Query 37207 TACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAA 37266 | || || | ||||| ||||| || | || ||||| | |||| ||| || | ||| | Sbjct 2591630 TGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGA 2591571 Query 37267 ATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGAC 37326 |||| | ||||||||| ||||||||||| || ||||||||||||||||| ||||| | || Sbjct 2591570 ATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACAC 2591511 Query 37327 GTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATT 37386 | || || | | || |||||| | |||||||||||| | Sbjct 2591510 ATTCTCCATGGGTGGCTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCT 2591451 Query 37387 TAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTA 37446 | ||||| ||||| ||||| || || ||||| || | | |||| |||| | | Sbjct 2591450 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAA 2591391 Query 37447 TATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAA 37506 |||||||| || || | ||| |||||||||||||| || ||||| || || ||||| | Sbjct 2591390 CGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGA 2591331 Query 37507 AACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 | ||||| ||||| | ||||| | |||| ||||| || | ||||| || | ||| Sbjct 2591330 AGCCATAGAAACAGCAGGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAG 2591272 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||| | ||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 2591271 TTTTCACTCACTATGCCATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATAT 2591212 Query 37626 CTTTCATCA 37634 || || ||| Sbjct 2591211 CTCTCCTCA 2591203 >seq418 Length=2079112 Score = 248 bits (274), Expect = 1e-60 Identities = 597/889 (67%), Gaps = 21/889 (2%) Strand=Plus/Plus Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGA 36937 ||||| | ||||| || || |||| |||| || || || || || || ||||| | ||| Sbjct 761078 CCCATCCTCTGATACTCCCCTACTC-TCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGA 761136 Query 36938 TATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATAAT 36995 || || |||||||| ||||||||||| | || | | | | | || | | Sbjct 761137 AATGTTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTGAAGCCCAGC 761194 Query 36996 TCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATAGTTTA 37053 ||| | ||| || ||||| |||||||| ||||| | ||||| || || ||| | Sbjct 761195 TCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA--GTTCA 761252 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCA 37112 | || || || || ||||| | || ||| ||| ||| | | || |||| | || ||| Sbjct 761253 TCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTT-CTATCCTGACTGCA 761311 Query 37113 TCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAA 37171 | || ||| | | | | || || || || || | | || ||| |||| Sbjct 761312 TTGACAATTATTTCTCTGACTCTCTGCTCCAAA-GGTTTATGTACCAGATGTTTGAACAT 761370 Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 |||||| |||||||||||||| | || |||||||| || || | | ||| ||||| || Sbjct 761371 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGT 761430 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 | || ||||| || |||| ||| |||| ||| ||||| | ||||||||| |||||| | Sbjct 761431 AAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATA 761490 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||| || ||||| |||||| ||| ||| | | | || || | || | | || Sbjct 761491 GAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTC 761550 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 |||||| | |||||||||||| || ||||| ||||| ||||| || Sbjct 761551 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 761610 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || ||||| || | | |||| |||| | ||||||| || || | ||| || Sbjct 761611 GTTGAAGAGGAATTCCCTCTCTTTGGAATCTTT-----AAGTATCGATGAGGAGACTGTA 761665 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 |||||||||||| || ||||| || || ||||| || ||||| ||||| || ||||| | Sbjct 761666 CATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTG- 761724 Query 37532 TAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 |||| ||||| || | ||||| || | ||||||||||| ||||| |||||||| | Sbjct 761725 TAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGG 761784 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 | || |||||||| || |||| |||||||| ||| || ||| | | | || Sbjct 761785 CCGCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCC 761844 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 | | | || || || || | || || || ||| | ||||||| ||| || Sbjct 761845 AGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTT 761904 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 761905 TCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq92 Length=5367877 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||| ||||| || | ||| ||||| | |||||||||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| || || |||||||| ||||||||||| ||||| || || || || | Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 37318 CTAC 37321 |||| Sbjct 3850796 CTAC 3850793 >seq446 Length=2046506 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| ||||| || | || ||||| | |||| ||| || Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 492488 ACTACACGT 492480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592273834820120