Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq602 257 2e-63
seq30 255 7e-63
seq418 248 1e-60
seq92 111 2e-19
seq446 107 2e-18
>seq602
Length=1640730
Score = 257 bits (284), Expect = 2e-63
Identities = 420/601 (70%), Gaps = 3/601 (0%)
Strand=Plus/Plus
Query 37160 ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219
|| ||| |||| ||| || |||||||||||||| | || |||||||| || || | | |
Sbjct 122437 ATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGC 122495
Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279
||| ||||| || | || ||||| || |||| ||| || | ||| ||||| | ||||||
Sbjct 122496 ATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAA 122555
Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339
||| | ||||||||| || ||||| ||||||||||| ||||| | || | || | ||
Sbjct 122556 AGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGT 122615
Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399
| | || |||||| | | |||||||||||| || ||||| ||
Sbjct 122616 GGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCAT 122675
Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459
||| ||||| || || ||||| || | | |||| || | | || |||||||| ||
Sbjct 122676 TGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGAT 122735
Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519
|| | ||| |||||||||||||| || ||||| || || ||||| || ||||| |||||
Sbjct 122736 GAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACA 122795
Query 37520 CCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578
| ||||| | |||| ||||| || | ||||| ||| | ||||||||||| ||||
Sbjct 122796 GCAGGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTA 122854
Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTG 37638
| |||||||| || || || |||||||| |||| |||||||| ||| || ||| |
Sbjct 122855 TTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTT 122914
Query 37639 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAAC 37698
| | ||| | | || || || || | || || || ||| | ||||||||
Sbjct 122915 TCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATG 122974
Query 37699 TTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAA 37758
||| || ||||||||| ||| ||||||| | || || ||||| || ||||
Sbjct 122975 AGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAA 123034
Query 37759 A 37759
|
Sbjct 123035 A 123035
>seq30
Length=8517879
Score = 255 bits (282), Expect = 7e-63
Identities = 576/849 (68%), Gaps = 20/849 (2%)
Strand=Plus/Minus
Query 36798 aaataaaaatattatttttccttcattt--tttaaaaatcttcatctaacgtaaatttta 36855
||| |||||||| | |||||| || |||| || || |||| || |||||
Sbjct 2592043 AAAAAAAAATATCAGCACACCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAGT 2591984
Query 36856 tttcCTTATTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAA 36915
| ||| | ||| ||| || ||||| | ||||| || || | || |||| |||
Sbjct 2591983 TGTCCGTTGAACTTGACATCACACCCATCCTCTGATACTCGCCTAGTC-TCTTCTTAAAG 2591925
Query 36916 AATTT-GTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTA 36974
|| || || || ||||| | ||| || || |||||||| ||||||||||| | || |
Sbjct 2591924 AAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTC--TCTACTC 2591867
Query 36975 TATATAG--TACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT 37032
| | | | || | | ||| | || || || || || ||||| ||||| |
Sbjct 2591866 TGAAAACCTTGCTGAAGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACT 2591807
Query 37033 TACACATTA--GTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAA 37089
||||| || || ||| || || || || || ||||| | || | | ||| |||
Sbjct 2591806 GCTTCATTAAAGTGCA--GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAA 2591749
Query 37090 ATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTG 37146
| | || |||| | ||||||| || |||||| | | ||| ||| || | |
Sbjct 2591748 CTCCTGTT-CTATCCTGACAGCATTGACAATTATATTT-CTCTGACTCTCTGCTCCGAAG 2591691
Query 37147 GGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTC 37206
| || | | || ||| |||| |||||| |||||||||||||| | || |||||||
Sbjct 2591690 GTTTATGTAGCAGATGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTC 2591631
Query 37207 TACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAA 37266
| || || | ||||| ||||| || | || ||||| | |||| ||| || | ||| |
Sbjct 2591630 TGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGA 2591571
Query 37267 ATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGAC 37326
|||| | ||||||||| ||||||||||| || ||||||||||||||||| ||||| | ||
Sbjct 2591570 ATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACAC 2591511
Query 37327 GTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATT 37386
| || || | | || |||||| | |||||||||||| |
Sbjct 2591510 ATTCTCCATGGGTGGCTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCT 2591451
Query 37387 TAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTA 37446
| ||||| ||||| ||||| || || ||||| || | | |||| |||| | |
Sbjct 2591450 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAA 2591391
Query 37447 TATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAA 37506
|||||||| || || | ||| |||||||||||||| || ||||| || || ||||| |
Sbjct 2591390 CGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGA 2591331
Query 37507 AACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAG 37565
| ||||| ||||| | ||||| | |||| ||||| || | ||||| || | |||
Sbjct 2591330 AGCCATAGAAACAGCAGGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAG 2591272
Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625
|||||| | ||||| |||||||| ||||| |||||||| || |||| |||||||| |
Sbjct 2591271 TTTTCACTCACTATGCCATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATAT 2591212
Query 37626 CTTTCATCA 37634
|| || |||
Sbjct 2591211 CTCTCCTCA 2591203
>seq418
Length=2079112
Score = 248 bits (274), Expect = 1e-60
Identities = 597/889 (67%), Gaps = 21/889 (2%)
Strand=Plus/Plus
Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGA 36937
||||| | ||||| || || |||| |||| || || || || || || ||||| | |||
Sbjct 761078 CCCATCCTCTGATACTCCCCTACTC-TCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGA 761136
Query 36938 TATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATAAT 36995
|| || |||||||| ||||||||||| | || | | | | | || | |
Sbjct 761137 AATGTTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTGAAGCCCAGC 761194
Query 36996 TCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATAGTTTA 37053
||| | ||| || ||||| |||||||| ||||| | ||||| || || ||| |
Sbjct 761195 TCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA--GTTCA 761252
Query 37054 TACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCA 37112
| || || || || ||||| | || ||| ||| ||| | | || |||| | || |||
Sbjct 761253 TCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTT-CTATCCTGACTGCA 761311
Query 37113 TCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAA 37171
| || ||| | | | | || || || || || | | || ||| ||||
Sbjct 761312 TTGACAATTATTTCTCTGACTCTCTGCTCCAAA-GGTTTATGTACCAGATGTTTGAACAT 761370
Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231
|||||| |||||||||||||| | || |||||||| || || | | ||| ||||| ||
Sbjct 761371 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGT 761430
Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291
| || ||||| || |||| ||| |||| ||| ||||| | ||||||||| |||||| |
Sbjct 761431 AAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATA 761490
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351
||| || ||||| |||||| ||| ||| | | | || || | || | | ||
Sbjct 761491 GAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTC 761550
Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411
|||||| | |||||||||||| || ||||| ||||| ||||| ||
Sbjct 761551 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 761610
Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471
|| ||||| || | | |||| |||| | ||||||| || || | ||| ||
Sbjct 761611 GTTGAAGAGGAATTCCCTCTCTTTGGAATCTTT-----AAGTATCGATGAGGAGACTGTA 761665
Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531
|||||||||||| || ||||| || || ||||| || ||||| ||||| || ||||| |
Sbjct 761666 CATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTG- 761724
Query 37532 TAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590
|||| ||||| || | ||||| || | ||||||||||| ||||| |||||||| |
Sbjct 761725 TAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGG 761784
Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650
| || |||||||| || |||| |||||||| ||| || ||| | | | ||
Sbjct 761785 CCGCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCC 761844
Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710
| | | || || || || | || || || ||| | ||||||| ||| ||
Sbjct 761845 AGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTT 761904
Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759
||||||||| ||||||||||| | || || ||||| || |||||
Sbjct 761905 TCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953
>seq92
Length=5367877
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | ||||| ||||| || | ||| ||||| | ||||||||||
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||||||||| || || |||||||| ||||||||||| ||||| || || || || |
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797
Query 37318 CTAC 37321
||||
Sbjct 3850796 CTAC 3850793
>seq446
Length=2046506
Score = 107 bits (118), Expect = 2e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | ||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||| | ||||||||| ||||||||||| || ||||| ||||||||||| |||
Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 492488 ACTACACGT 492480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592273834820120
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