Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq594 178 2e-39 seq339 100 5e-16 >seq594 Length=1398243 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| ||||||||||| Sbjct 999753 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACCTGC 999694 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 || ||||| || || || ||||||| || ||||| || | |||||| |||||| Sbjct 999693 TCGCGCAGCACCCCGGCCGTGCTGGACAGCCCCGCGTTCTCCGCCTTGAGTGTCTTCACC 999634 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||||||||| |||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 999633 TTGTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 999574 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 999573 CGGTTACGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 999514 Query 241625 GAC 241627 ||| Sbjct 999513 GAC 999511 >seq339 Length=2552696 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | | || |||||||| ||||||||| |||||| ||||||||||| ||| Sbjct 2045394 GTGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 2045335 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| |||||| ||||||||||||||||||| || |||||| ||| Sbjct 2045334 TTGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTGCCCGTCTCTGTCTGA 2045275 Query 213648 GAC 213650 ||| Sbjct 2045274 GAC 2045272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931465228939520