Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq30 125 1e-23 >seq30 Length=8517879 Score = 125 bits (138), Expect = 1e-23 Identities = 376/567 (66%), Gaps = 19/567 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | |||| ||||| || || ||| | || Sbjct 2591104 GATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTGGAC 2591163 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA--GACGAGCAGCATTTTCTCA 25591 || ||| |||||| | |||| | || | | || || ||| ||||| | Sbjct 2591164 CTTTCCAGGGACATCCAGCACTGGGAGGCCCC-TGAAACCTGAGGAGAGATATTTTATAT 2591222 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || |||| ||||| |||||| |||||| ||||||| || || || ||| Sbjct 2591223 CCCATGTCCTGGCTTTCTTCGCAGCCAGTGATGGCATAGTGAGTGAAAACTTGGTGGAGC 2591282 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | || | | ||||| ||| ||| || ||| |||||||| || |||||||| || Sbjct 2591283 GGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCTATGGCTTCCAGATTGC 2591340 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 ||| ||||| | |||||||| |||| || || || || || ||| ||| ||| Sbjct 2591341 CATGGAAAACATACACTCTGAAATGTA---CAGTCTCCTCATCGATACTTACGTTAAAGA 2591397 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | ||||| || || || || || ||| || || | | |||| ||| Sbjct 2591398 TTCCAAAGAGAGGGAATTCCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAA 2591457 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGG 25885 ||| |||||| || ||||| | || || || || ||| || | | | Sbjct 2591458 GGCAGATTGGGCCTTGTGTTGGATTGGG-GACAAAGAAGCCACCCATGGAGAATGTGTAG 2591516 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 |||||||||| || || || || ||||| || ||||| ||||| |||| ||||||| Sbjct 2591517 TAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGC 2591576 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||| | | | |||| |||||||| || ||| ||||| || ||||| || ||||| || Sbjct 2591577 TCAAG-AAACGAGGACTGATGCCCGGTCT-TACATTTTCGAATGAGCTAATTAGCAGAGA 2591634 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTG 26030 ||||| ||||| | |||||||| || Sbjct 2591635 TGAGGGACTCCATTGTGATTTTGCGTG 2591661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928777423920320