Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_019559.1
Length=202946
Score E
Sequences producing significant alignments: (Bits) Value
seq52 107 2e-18
>seq52
Length=6537636
Score = 107 bits (118), Expect = 2e-18
Identities = 158/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 153790 ATTGTAACGTGGCAAAAGAAGAAAGCTGT-AGGTCCAGAAAATATGGCCACGTATAGCAA 153848
||||| || ||||| || || |||| | | |||||||||| |||| ||| || |||||
Sbjct 4975443 ATTGTGACATGGCAGAA-AATTAAGCAGGGAAGTCCAGAAAACATGGTCACCTACAGCAA 4975385
Query 153849 AGCCCACGGTGTAGTGCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGG 153908
||| || || ||||||||||| | ||||| |||| | | ||||| ||| | | |
Sbjct 4975384 GAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAAGTAAATATCACCCAGCTGGA 4975325
Query 153909 TCTTTTAAACAGTAGTATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATAT 153968
|| |||| | || || || |||||| | || ||||| ||||| || |||||||
Sbjct 4975324 ACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGATGGATGTTATAA 4975265
Query 153969 GTGTCTGTTTAATATGTTCGGTTCTGGTAAGGTATCGGGAA 154009
||| | || |||| || |||||||| ||| | || ||||
Sbjct 4975264 TTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAA 4975224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 649252101459280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |