Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq52 107 2e-18 >seq52 Length=6537636 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 153790 ATTGTAACGTGGCAAAAGAAGAAAGCTGT-AGGTCCAGAAAATATGGCCACGTATAGCAA 153848 ||||| || ||||| || || |||| | | |||||||||| |||| ||| || ||||| Sbjct 4975443 ATTGTGACATGGCAGAA-AATTAAGCAGGGAAGTCCAGAAAACATGGTCACCTACAGCAA 4975385 Query 153849 AGCCCACGGTGTAGTGCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGG 153908 ||| || || ||||||||||| | ||||| |||| | | ||||| ||| | | | Sbjct 4975384 GAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAAGTAAATATCACCCAGCTGGA 4975325 Query 153909 TCTTTTAAACAGTAGTATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATAT 153968 || |||| | || || || |||||| | || ||||| ||||| || ||||||| Sbjct 4975324 ACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGATGGATGTTATAA 4975265 Query 153969 GTGTCTGTTTAATATGTTCGGTTCTGGTAAGGTATCGGGAA 154009 ||| | || |||| || |||||||| ||| | || |||| Sbjct 4975264 TTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAA 4975224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649252101459280