Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq24 104 2e-16
seq409 98.7 6e-15
seq1018 86.0 4e-11
>seq24
Length=8999101
Score = 104 bits (114), Expect = 2e-16
Identities = 150/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621
|||||||||||||| ||| |||| ||| || || || | ||||| |||||
Sbjct 2890518 ACAAGATGAAGTGTGGACTC-CTTTTGAATG-TTGTAGTCCGACAGAGTATGCCCATCTT 2890575
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| || ||||| ||||||||||| |||||||| || ||||||||||| ||||| || || |
Sbjct 2890576 CCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCT 2890635
Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741
| ||||| ||| ||| || |||||||| | | | || || || || || |
Sbjct 2890636 GGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCT 2890695
Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| ||||| |||||||| ||
Sbjct 2890696 TCCCAGTGAGGGTCTTCACGAAAATCTG 2890723
>seq409
Length=2050159
Score = 98.7 bits (108), Expect = 6e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | || || || ||||| || ||||| ||||||||||| || || |||||||
Sbjct 859646 ATGCCGTGGTCACAGTACCTGCATACTTCAATGACTCTCAACGTCAGGCTACCAAAGATG 859705
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | ||||| ||||| ||||| | | || |||||||| ||||| || || ||
Sbjct 859706 CTGGGACTATTGCTGGTCTGAATGTACTTAGAATCATTAATGAGCCAACTGCTGCTGCCA 859765
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||| | ||||| ||
Sbjct 859766 TTGCTTATGGCTTGGATAAAAA 859787
Score = 98.7 bits (108), Expect = 6e-15
Identities = 222/329 (67%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||||||||| ||||| | || ||||| || || | | | ||||| ||
Sbjct 860104 ACTGCTTGTGAACGTGCAAAGCGTACACTCTCTTCCAGCACCCAGGCCAGTATTGAAATT 860163
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | |||||||||||||| | || ||||| |||| |||||||||
Sbjct 860164 GATTCCCTGTATGAAGGAATTGATTTCTACACCTCCATTACCCGGGCCCGATTTGAAGAA 860223
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| | || | || | || || || ||| ||| || | ||| |
Sbjct 860224 TTGAATGCTGACTTGTTCCGTGGCACCCTGGATCCAGTAGAAAAAGCCCTTCGGGATGCC 860283
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
|| ||||||||||| || | ||||| ||||| | || || ||||| || | || ||
Sbjct 860284 AAGCTTGACAAATCCCAGATTCATGACATTGTCTTGGTGGGTGGTTCTACTCGTATCCCC 860343
Query 475736 AAAATAAGAGAAATGCTTT--CATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTA 475792
|| || |||| ||||| || | | || ||||| ||| | || || | || |
Sbjct 860344 AAGAT-TCAGAA--GCTTTTACAGGACTTCTTCAATGGGAAAGAATTGAACAAGAGCATC 860400
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821
|| |||||||| ||||| || ||||| ||
Sbjct 860401 AACCCTGATGAGGCTGTGGCTTATGGTGC 860429
Score = 86.0 bits (94), Expect = 4e-11
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
|||||||||| | | ||||| ||||| ||| ||||| | ||| | || |||
Sbjct 861058 TGAAGGTGAACGTGCCATGACTAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGG 861117
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|| || ||||| ||| | || ||||| || ||||| || || |||||||||||||| ||
Sbjct 861118 CATACCCCCTGCACCCCGTGGTGTTCCCCAGATTGAGGTCACATTTGATATTGATGCCAA 861177
Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||| || || ||||| ||||| |||||
Sbjct 861178 TGGCATCCTCAATGTGTCTGCTGTGGATAA 861207
>seq1018
Length=501931
Score = 86.0 bits (94), Expect = 4e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| || |||||||| ||| |||| ||||||| || || || |||||||| || |||||
Sbjct 485967 GGAATCCCTCCTGCACCCCGAGGTATTCCTCAGATCGAGGTGACTTTTGACATAGATGCC 485908
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||||||||||| |||||||| ||| |||||
Sbjct 485907 AATGGTATTCTAAATGTTACAGCTATGGATAA 485876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267930281173844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |