Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-16 seq409 98.7 6e-15 seq1018 86.0 4e-11 >seq24 Length=8999101 Score = 104 bits (114), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 |||||||||||||| ||| |||| ||| || || || | ||||| ||||| Sbjct 2890518 ACAAGATGAAGTGTGGACTC-CTTTTGAATG-TTGTAGTCCGACAGAGTATGCCCATCTT 2890575 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | || ||||| ||||||||||| |||||||| || ||||||||||| ||||| || || | Sbjct 2890576 CCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCT 2890635 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741 | ||||| ||| ||| || |||||||| | | | || || || || || | Sbjct 2890636 GGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCT 2890695 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| |||||||| || Sbjct 2890696 TCCCAGTGAGGGTCTTCACGAAAATCTG 2890723 >seq409 Length=2050159 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || ||||| || ||||| ||||||||||| || || ||||||| Sbjct 859646 ATGCCGTGGTCACAGTACCTGCATACTTCAATGACTCTCAACGTCAGGCTACCAAAGATG 859705 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| ||||| ||||| | | || |||||||| ||||| || || || Sbjct 859706 CTGGGACTATTGCTGGTCTGAATGTACTTAGAATCATTAATGAGCCAACTGCTGCTGCCA 859765 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | ||||| || Sbjct 859766 TTGCTTATGGCTTGGATAAAAA 859787 Score = 98.7 bits (108), Expect = 6e-15 Identities = 222/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||||||| ||||| | || ||||| || || | | | ||||| || Sbjct 860104 ACTGCTTGTGAACGTGCAAAGCGTACACTCTCTTCCAGCACCCAGGCCAGTATTGAAATT 860163 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | |||||||||||||| | || ||||| |||| ||||||||| Sbjct 860164 GATTCCCTGTATGAAGGAATTGATTTCTACACCTCCATTACCCGGGCCCGATTTGAAGAA 860223 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | || | || | || || || ||| ||| || | ||| | Sbjct 860224 TTGAATGCTGACTTGTTCCGTGGCACCCTGGATCCAGTAGAAAAAGCCCTTCGGGATGCC 860283 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || ||||||||||| || | ||||| ||||| | || || ||||| || | || || Sbjct 860284 AAGCTTGACAAATCCCAGATTCATGACATTGTCTTGGTGGGTGGTTCTACTCGTATCCCC 860343 Query 475736 AAAATAAGAGAAATGCTTT--CATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTA 475792 || || |||| ||||| || | | || ||||| ||| | || || | || | Sbjct 860344 AAGAT-TCAGAA--GCTTTTACAGGACTTCTTCAATGGGAAAGAATTGAACAAGAGCATC 860400 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821 || |||||||| ||||| || ||||| || Sbjct 860401 AACCCTGATGAGGCTGTGGCTTATGGTGC 860429 Score = 86.0 bits (94), Expect = 4e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||| | | ||||| ||||| ||| ||||| | ||| | || ||| Sbjct 861058 TGAAGGTGAACGTGCCATGACTAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGG 861117 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || ||||| ||| | || ||||| || ||||| || || |||||||||||||| || Sbjct 861118 CATACCCCCTGCACCCCGTGGTGTTCCCCAGATTGAGGTCACATTTGATATTGATGCCAA 861177 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || || ||||| ||||| ||||| Sbjct 861178 TGGCATCCTCAATGTGTCTGCTGTGGATAA 861207 >seq1018 Length=501931 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| ||| |||| ||||||| || || || |||||||| || ||||| Sbjct 485967 GGAATCCCTCCTGCACCCCGAGGTATTCCTCAGATCGAGGTGACTTTTGACATAGATGCC 485908 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||||||||| |||||||| ||| ||||| Sbjct 485907 AATGGTATTCTAAATGTTACAGCTATGGATAA 485876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267930281173844