Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq47 334 9e-87 seq52 145 9e-30 seq23 123 3e-23 >seq47 Length=7047778 Score = 334 bits (370), Expect = 9e-87 Identities = 664/981 (68%), Gaps = 3/981 (0%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| || |||||||| || | |||| |||| ||| || ||||| || Sbjct 6982256 CAGATGCTCATCCAAGCACTGGACGGCAAAGAGGTCAGTGTCTGTGTCAAACTTATTGGC 6982315 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| | | | | || ||||||| || |||||||| || ||||| || || Sbjct 6982316 AAATAAGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCTCCGGCTCCAAACACACACAC 6982372 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | || || || |||||||||||||| |||| || || | || | ||||| Sbjct 6982373 GGAGCGCAGGTAAACCCCATTGCAAGGCGGGTATGGAGCACCCTTGGAAACATTGCCTTC 6982432 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||||||||||||||| || || || ||||||| || | || || || || Sbjct 6982433 AAAGTACTGCCACTTCACAAACCTAGCAATAGCACGCATGTCAGACATATCATACTTATA 6982492 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | ||| | | || || || ||||| || | ||| | ||||||||| || | || Sbjct 6982493 GCTTAAGGGCAGTGAGCCTGGGACTCCGGGGATCCTCTGAATGGTGGCCCAGAGATACTC 6982552 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||||||||| |||| | | ||| Sbjct 6982553 ATCTGGGCTGTATGTGTCTTTGGTCCACTCCATGAACTCGTGGATTTTTTCATTCTCCAG 6982612 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || || | ||| | Sbjct 6982613 CACATACCCCACATACTTCCTACTGACTACAAAATAAGCACTGCCTGAAAACAGAGGTGT 6982672 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || | |||||| || ||||| | || | ||| || | | | Sbjct 6982673 TTCCAAAGGAGGGGGCATTTTGTCAGTCCCTGTGTTCGTCAGCTTTCCATTAATGACTTC 6982732 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 | |||| ||||| || | | || | | |||||| | ||| || || || |||| Sbjct 6982733 ATAATGCTTTTTCCATCTTTCTTTTTTATTGGCTGGCATTCTTTCGGTTTCCAGGTTGTT 6982792 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| | || || |||| | |||| || || | ||| || || | ||||| || Sbjct 6982793 TTCACCCATTAATGACTTGAGCTTCCTGACAATTTCCAAGTTGGTTTTAATAGGAAAATC 6982852 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 | || || | ||||||| ||||||||| | | | ||| | || ||||||| ||| Sbjct 6982853 CATGCCACAGAGATTTATCAAGTACTTCCAGTCTGTGTTCATGCTGTAAAGGTCCCGCAT 6982912 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 || || | || ||||| || ||||||||||| || ||||| || |||||| || || Sbjct 6982913 ACAGTTGAGGTCGGCCTGAACACGGCTCCAGGATGCATACACCACATTCTCTGATTGGCT 6982972 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 ||||| |||||| || |||||| ||||| || || ||| | || || || || Sbjct 6982973 GGCCAGAAAGACATTGCTGAAACAGGACACAATGCCAGTCACGGAAAGCAAAAAAGAATT 6983032 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 || | ||| ||||||||| | |||||| | ||||||||| |||||||| || || Sbjct 6983033 CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCCTATAGATGGCTCTTAG 6983092 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 || ||| || ||||| || ||||| ||||| | || || || || ||||| ||| |||| Sbjct 6983093 CAGCCTGTCAAACATTTCAATCTTGTGATGAACTACTATGGAATATGCTATTGGATACTC 6983152 Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011 | ||| || || || | | | ||| || || ||||||||||| | ||| Sbjct 6983153 AGCCTCTTCTTTGCTAAGAGGTTCTACAATGTATTTGCGATTCTTGATAAAAGATGGACA 6983212 Query 161012 ATCCCGCGTCATGTTGATATA 161032 || | |||||||| ||||| Sbjct 6983213 GTCTCTGGTCATGTTTATATA 6983233 >seq52 Length=6537636 Score = 145 bits (160), Expect = 9e-30 Identities = 214/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 168161 GCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCC 168220 ||| || |||| || ||||| || || || || || ||||||| || | | || || Sbjct 4975216 GCAGGTGATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAAACAATTATAACATCC 4975275 Query 168221 TTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGT 168280 || ||||||| |||||||||||| || || | |||||||||| ||| ||| ||| || Sbjct 4975276 ATCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTTCTGAGTTCCAGCTGGGT 4975335 Query 168281 TATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGT 168340 || || || ||| ||||||||||| |||| ||||| || ||||||| |||| |||| Sbjct 4975336 GATATTTACTTTATCCTTATAAGGAGGCTGAAGCACAACCCCATGGTTCTTGCTGTAGGT 4975395 Query 168341 GGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTT 168400 | ||||||| || || || ||| || |||||||| || || ||||| || || | Sbjct 4975396 GACCATGTTTTCTGGACTTCCCTGCTTAATTTTCTGCCATGTCACAATCAGTACTTCCTG 4975455 Query 168401 ATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTG 168460 | || || | || | || ||||| || |||||||| | ||| ||||||| Sbjct 4975456 GGAACTTTGTAGAGTGCACCGTAGGGAAGCAGGCGTGTTCAGTTGCACTCCTACATCTTG 4975515 Query 168461 AGT 168463 || Sbjct 4975516 GGT 4975518 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 167940 TTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCA 167999 || || || ||||||||||| ||||| | || | || ||||| ||| |||||||||| Sbjct 4971672 TTCCCCACCTGACTCTTTGGGTCTTTGAAATGGAGAACACTAGTGACAGATGTAGTTCCA 4971731 Query 168000 TTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAAT 168059 ||| |||| | | | ||| || |||||||||| |||||||| | || ||||| || Sbjct 4971732 TTGGGATGGTAGATGATTTCAGTACTGTTCTCAAAGCCTGATCCAGAAACATTCCATAAA 4971791 Query 168060 ATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || | |||||| || ||||| | ||||| || |||| ||||| Sbjct 4971792 ATCATAGGAGCTGGGCGTGCATTGGCAGAACAAGTAACATTTA 4971834 >seq23 Length=8387762 Score = 123 bits (136), Expect = 3e-23 Identities = 526/820 (64%), Gaps = 31/820 (4%) Strand=Plus/Minus Query 160223 GTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTC 160282 ||| || |||| | ||||||||| || | |||||| || || | |||||| ||| ||| Sbjct 3565424 GTCCCCCTCGTGGCCCTGCCACTTGACCAGCCTGGCAATGGCGTTCATGTCTGAGTTGTG 3565365 Query 160283 GTATTTGTAC--ATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340 | | ||| || ||||| | | || || | | ||| | ||| ||||| ||| Sbjct 3565364 GAACTTGGGGTGAT-AGGGGT-CAGAGCCAGGCATCCAGGGAGCCCTCTGCAGGGTAGCC 3565307 Query 160341 CACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAA 160399 |||||||| ||||| |||||||| |||||||| ||| || |||||| || ||| Sbjct 3565306 CACAGGTGCTCGTCAGGGCTGTAGGTGTCCTTGACCCACTCGATGAACCGCTGGGAT--- 3565250 Query 160400 CCTG---TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456 ||| | | ||| || || ||| ||| |||| ||| |||| ||| || |||| Sbjct 3565249 -CTGGGGTTCTCCAGCACCTGCTGGACGAAGGCCCTGGACACCACAATGTAGGCATTGCC 3565191 Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 ||| || | | | | || || | ||| ||| || ||||| ||| Sbjct 3565190 AACGAACATTTGGAGGTTTTCTGGGGGAGGGTCCTTGAGCTTGTCGGTGCCGCGCACAGT 3565131 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGT 160574 || ||||| ||| | | ||||| | | | |||||| | ||||| | Sbjct 3565130 GTCTGTCACCT---CGTAGTGGTATTTCCAGCGGGACCTCTTGTACTCGGTGGGCACC-- 3565076 Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 || | ||| | ||||| || | ||| | | || | || ||||| ||| Sbjct 3565075 TCTGACTCCATGCTGTTCTTCCCATTCAGCAACCTGAGGGCCAGCACCATCTCGGCGTTG 3565016 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT---CGCGCTC 160691 |||||| || |||||||| ||||| ||| | | ||||||||| || |||| Sbjct 3565015 GTCTTGGTGGGGAAGTCGGTCCCGCAGGTGTTGAGGAAGTACTTCCAGGGGACCGGGCTC 3564956 Query 160692 AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTAC 160751 || | |||||| |||||| || | ||||| ||||| ||| |||||| || ||| Sbjct 3564955 CGGA---GAAGGTCCTCCATGCAGTTGAGGTCTGCTTGCACCCGGGACCAGGAGGCATAC 3564899 Query 160752 ACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACC 160811 || || | | | |||||||||| ||||| || ||| || || | ||| ||| Sbjct 3564898 ACCACCCGCACCAACTTACTGGCCAGGAAGACATTGGGGAAGCAGGAGATGATGCCCTTG 3564839 Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 ||||| ||| | | ||| |||||||||||||||| || | |||||| Sbjct 3564838 ACCGCGTCCTTGAAGGAGTCGGGGGACTTCTGGTCCACGTGCACGCAGTAGATGTTCTGG 3564779 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 || || || | |||| |||| || |||||| |||| | ||| | ||||| ||| || Sbjct 3564778 GGGGCATACACAGCCCGCAGCAGCCGCTCGAAGTTCTCGACCTTCTCATGGACCACCATG 3564719 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC-- 160989 |||||||| | || || | ||| | | |||||||| ||||||| || | | Sbjct 3564718 GAGTAGGCGAGGGGGAAGGCCAACTCGGCCCTGCTCAGGGAGAAGGTCAGGAACCTCCTC 3564659 Query 160990 -GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGA 161028 | |||||| || | |||| ||||| |||| ||||| Sbjct 3564658 TGGGTCTTG---AAGTGCGCACAGTCCCGGGTCAGGTTGA 3564622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577177329962280