Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq47 334 9e-87
seq52 145 9e-30
seq23 123 3e-23
>seq47
Length=7047778
Score = 334 bits (370), Expect = 9e-87
Identities = 664/981 (68%), Gaps = 3/981 (0%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| || |||||||| || | |||| |||| ||| || ||||| ||
Sbjct 6982256 CAGATGCTCATCCAAGCACTGGACGGCAAAGAGGTCAGTGTCTGTGTCAAACTTATTGGC 6982315
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|| | ||||| | | | | || ||||||| || |||||||| || ||||| || ||
Sbjct 6982316 AAATAAGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCTCCGGCTCCAAACACACACAC 6982372
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | || || || |||||||||||||| |||| || || | || | |||||
Sbjct 6982373 GGAGCGCAGGTAAACCCCATTGCAAGGCGGGTATGGAGCACCCTTGGAAACATTGCCTTC 6982432
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||||||||||||||||||||| || || || ||||||| || | || || || ||
Sbjct 6982433 AAAGTACTGCCACTTCACAAACCTAGCAATAGCACGCATGTCAGACATATCATACTTATA 6982492
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | ||| | | || || || ||||| || | ||| | ||||||||| || | ||
Sbjct 6982493 GCTTAAGGGCAGTGAGCCTGGGACTCCGGGGATCCTCTGAATGGTGGCCCAGAGATACTC 6982552
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| ||||| || | ||| ||||||||||| |||| | | |||
Sbjct 6982553 ATCTGGGCTGTATGTGTCTTTGGTCCACTCCATGAACTCGTGGATTTTTTCATTCTCCAG 6982612
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || | || ||||| || || ||||| || || | ||| |
Sbjct 6982613 CACATACCCCACATACTTCCTACTGACTACAAAATAAGCACTGCCTGAAAACAGAGGTGT 6982672
Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531
| ||| || | |||||| || ||||| | || | ||| || | | |
Sbjct 6982673 TTCCAAAGGAGGGGGCATTTTGTCAGTCCCTGTGTTCGTCAGCTTTCCATTAATGACTTC 6982732
Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591
| |||| ||||| || | | || | | |||||| | ||| || || || ||||
Sbjct 6982733 ATAATGCTTTTTCCATCTTTCTTTTTTATTGGCTGGCATTCTTTCGGTTTCCAGGTTGTT 6982792
Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651
|||| | || || |||| | |||| || || | ||| || || | ||||| ||
Sbjct 6982793 TTCACCCATTAATGACTTGAGCTTCCTGACAATTTCCAAGTTGGTTTTAATAGGAAAATC 6982852
Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711
| || || | ||||||| ||||||||| | | | ||| | || ||||||| |||
Sbjct 6982853 CATGCCACAGAGATTTATCAAGTACTTCCAGTCTGTGTTCATGCTGTAAAGGTCCCGCAT 6982912
Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771
|| || | || ||||| || ||||||||||| || ||||| || |||||| || ||
Sbjct 6982913 ACAGTTGAGGTCGGCCTGAACACGGCTCCAGGATGCATACACCACATTCTCTGATTGGCT 6982972
Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831
||||| |||||| || |||||| ||||| || || ||| | || || || ||
Sbjct 6982973 GGCCAGAAAGACATTGCTGAAACAGGACACAATGCCAGTCACGGAAAGCAAAAAAGAATT 6983032
Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891
|| | ||| ||||||||| | |||||| | ||||||||| |||||||| || ||
Sbjct 6983033 CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCCTATAGATGGCTCTTAG 6983092
Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951
|| ||| || ||||| || ||||| ||||| | || || || || ||||| ||| ||||
Sbjct 6983093 CAGCCTGTCAAACATTTCAATCTTGTGATGAACTACTATGGAATATGCTATTGGATACTC 6983152
Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011
| ||| || || || | | | ||| || || ||||||||||| | |||
Sbjct 6983153 AGCCTCTTCTTTGCTAAGAGGTTCTACAATGTATTTGCGATTCTTGATAAAAGATGGACA 6983212
Query 161012 ATCCCGCGTCATGTTGATATA 161032
|| | |||||||| |||||
Sbjct 6983213 GTCTCTGGTCATGTTTATATA 6983233
>seq52
Length=6537636
Score = 145 bits (160), Expect = 9e-30
Identities = 214/303 (71%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 168161 GCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCC 168220
||| || |||| || ||||| || || || || || ||||||| || | | || ||
Sbjct 4975216 GCAGGTGATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAAACAATTATAACATCC 4975275
Query 168221 TTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGT 168280
|| ||||||| |||||||||||| || || | |||||||||| ||| ||| ||| ||
Sbjct 4975276 ATCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTTCTGAGTTCCAGCTGGGT 4975335
Query 168281 TATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGT 168340
|| || || ||| ||||||||||| |||| ||||| || ||||||| |||| ||||
Sbjct 4975336 GATATTTACTTTATCCTTATAAGGAGGCTGAAGCACAACCCCATGGTTCTTGCTGTAGGT 4975395
Query 168341 GGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTT 168400
| ||||||| || || || ||| || |||||||| || || ||||| || || |
Sbjct 4975396 GACCATGTTTTCTGGACTTCCCTGCTTAATTTTCTGCCATGTCACAATCAGTACTTCCTG 4975455
Query 168401 ATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTG 168460
| || || | || | || ||||| || |||||||| | ||| |||||||
Sbjct 4975456 GGAACTTTGTAGAGTGCACCGTAGGGAAGCAGGCGTGTTCAGTTGCACTCCTACATCTTG 4975515
Query 168461 AGT 168463
||
Sbjct 4975516 GGT 4975518
Score = 109 bits (120), Expect = 6e-19
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 167940 TTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCA 167999
|| || || ||||||||||| ||||| | || | || ||||| ||| ||||||||||
Sbjct 4971672 TTCCCCACCTGACTCTTTGGGTCTTTGAAATGGAGAACACTAGTGACAGATGTAGTTCCA 4971731
Query 168000 TTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAAT 168059
||| |||| | | | ||| || |||||||||| |||||||| | || ||||| ||
Sbjct 4971732 TTGGGATGGTAGATGATTTCAGTACTGTTCTCAAAGCCTGATCCAGAAACATTCCATAAA 4971791
Query 168060 ATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|| | |||||| || ||||| | ||||| || |||| |||||
Sbjct 4971792 ATCATAGGAGCTGGGCGTGCATTGGCAGAACAAGTAACATTTA 4971834
>seq23
Length=8387762
Score = 123 bits (136), Expect = 3e-23
Identities = 526/820 (64%), Gaps = 31/820 (4%)
Strand=Plus/Minus
Query 160223 GTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTC 160282
||| || |||| | ||||||||| || | |||||| || || | |||||| ||| |||
Sbjct 3565424 GTCCCCCTCGTGGCCCTGCCACTTGACCAGCCTGGCAATGGCGTTCATGTCTGAGTTGTG 3565365
Query 160283 GTATTTGTAC--ATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340
| | ||| || ||||| | | || || | | ||| | ||| ||||| |||
Sbjct 3565364 GAACTTGGGGTGAT-AGGGGT-CAGAGCCAGGCATCCAGGGAGCCCTCTGCAGGGTAGCC 3565307
Query 160341 CACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAA 160399
|||||||| ||||| |||||||| |||||||| ||| || |||||| || |||
Sbjct 3565306 CACAGGTGCTCGTCAGGGCTGTAGGTGTCCTTGACCCACTCGATGAACCGCTGGGAT--- 3565250
Query 160400 CCTG---TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456
||| | | ||| || || ||| ||| |||| ||| |||| ||| || ||||
Sbjct 3565249 -CTGGGGTTCTCCAGCACCTGCTGGACGAAGGCCCTGGACACCACAATGTAGGCATTGCC 3565191
Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516
||| || | | | | || || | ||| ||| || ||||| |||
Sbjct 3565190 AACGAACATTTGGAGGTTTTCTGGGGGAGGGTCCTTGAGCTTGTCGGTGCCGCGCACAGT 3565131
Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGT 160574
|| ||||| ||| | | ||||| | | | |||||| | ||||| |
Sbjct 3565130 GTCTGTCACCT---CGTAGTGGTATTTCCAGCGGGACCTCTTGTACTCGGTGGGCACC-- 3565076
Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634
|| | ||| | ||||| || | ||| | | || | || ||||| |||
Sbjct 3565075 TCTGACTCCATGCTGTTCTTCCCATTCAGCAACCTGAGGGCCAGCACCATCTCGGCGTTG 3565016
Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT---CGCGCTC 160691
|||||| || |||||||| ||||| ||| | | ||||||||| || ||||
Sbjct 3565015 GTCTTGGTGGGGAAGTCGGTCCCGCAGGTGTTGAGGAAGTACTTCCAGGGGACCGGGCTC 3564956
Query 160692 AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTAC 160751
|| | |||||| |||||| || | ||||| ||||| ||| |||||| || |||
Sbjct 3564955 CGGA---GAAGGTCCTCCATGCAGTTGAGGTCTGCTTGCACCCGGGACCAGGAGGCATAC 3564899
Query 160752 ACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACC 160811
|| || | | | |||||||||| ||||| || ||| || || | ||| |||
Sbjct 3564898 ACCACCCGCACCAACTTACTGGCCAGGAAGACATTGGGGAAGCAGGAGATGATGCCCTTG 3564839
Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871
||||| ||| | | ||| |||||||||||||||| || | ||||||
Sbjct 3564838 ACCGCGTCCTTGAAGGAGTCGGGGGACTTCTGGTCCACGTGCACGCAGTAGATGTTCTGG 3564779
Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931
|| || || | |||| |||| || |||||| |||| | ||| | ||||| ||| ||
Sbjct 3564778 GGGGCATACACAGCCCGCAGCAGCCGCTCGAAGTTCTCGACCTTCTCATGGACCACCATG 3564719
Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC-- 160989
|||||||| | || || | ||| | | |||||||| ||||||| || | |
Sbjct 3564718 GAGTAGGCGAGGGGGAAGGCCAACTCGGCCCTGCTCAGGGAGAAGGTCAGGAACCTCCTC 3564659
Query 160990 -GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGA 161028
| |||||| || | |||| ||||| |||| |||||
Sbjct 3564658 TGGGTCTTG---AAGTGCGCACAGTCCCGGGTCAGGTTGA 3564622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577177329962280
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