Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq556 87.8 3e-12
seq24 84.2 4e-11
>seq556
Length=1594741
Score = 87.8 bits (96), Expect = 3e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| |||| |||||| | |||||||||| ||| || ||||||||||| || ||||||||
Sbjct 329542 ATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTT 329601
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAG 193320
||| || || |||| ||| | || || ||||| || || ||||| || ||||
Sbjct 329602 ATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAG 329657
>seq24
Length=8999101
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | || || | || ||||| | ||| | ||| || ||| || ||||| ||
Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || ||| || | || || || |||||||| | | || || ||||||||
Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||||||||| || || |||| ||| | ||| |||||||| || | ||| ||
Sbjct 2890619 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || || || || || || || || || || || ||||| ||
Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899589141318960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |