Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq30 125 1e-23 seq24 84.2 3e-11 >seq30 Length=8517879 Score = 125 bits (138), Expect = 1e-23 Identities = 296/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||||||||||||| || | || ||||||||| |||| || || ||| || Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | |||||||| | |||| ||| || ||||| ||||| ||||| ||| || |||||| Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 ||| || || ||||| || || |||| || | ||| || || || ||| Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || |||| ||||| Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426 Query 18394 ATTAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 || || | ||| || | |||||||||||||| | ||||| ||||| | | | Sbjct 2591425 GTTGAAGAGGAAT--TCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 ||||||||||| |||||| ||||||| || ||||| || | ||| || | | || || Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308 Query 18512 GGATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | | |||| || | ||| ||| | || ||||| || ||| | ||||| || ||| Sbjct 2591307 GTAATCTGAACTTCTTGGCT---AAACCGCTCCACCAAGTTTTCACTCACTATGCCATCA 2591251 Query 18569 GCAGATGCGAAAAATGCCAAAACAT 18593 | |||||| || |||| |||| Sbjct 2591250 CTGGCTGCGAAGAAAGCCAGGACAT 2591226 >seq24 Length=8999101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | || || | ||||| || || || || | || ||||| Sbjct 2890729 AAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCC 2890670 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| || |||||| || || || |||||||||||||| ||||| || Sbjct 2890669 TCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 2890610 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | |||||| ||| || |||||||| |||||| ||| | || || || Sbjct 2890609 CAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTAC 2890550 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| ||| | || |||||| | || || ||| | | || |||| Sbjct 2890549 AACAT-TCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGGTG 2890498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731818911834800