Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq30 125 1e-23
seq24 84.2 3e-11
>seq30
Length=8517879
Score = 125 bits (138), Expect = 1e-23
Identities = 296/445 (67%), Gaps = 10/445 (2%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||||||||||||| || | || ||||||||| |||| || || ||| ||
Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| |||||||| | |||| ||| || ||||| ||||| ||||| ||| || ||||||
Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546
Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333
||| || || ||||| || || |||| || | ||| || || || |||
Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486
Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393
| ||||| ||||| ||| | | | ||| || || |||| |||||
Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426
Query 18394 ATTAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451
|| || | ||| || | |||||||||||||| | ||||| ||||| | | |
Sbjct 2591425 GTTGAAGAGGAAT--TCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368
Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511
||||||||||| |||||| ||||||| || ||||| || | ||| || | | || ||
Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308
Query 18512 GGATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568
| | |||| || | ||| ||| | || ||||| || ||| | ||||| || |||
Sbjct 2591307 GTAATCTGAACTTCTTGGCT---AAACCGCTCCACCAAGTTTTCACTCACTATGCCATCA 2591251
Query 18569 GCAGATGCGAAAAATGCCAAAACAT 18593
| |||||| || |||| ||||
Sbjct 2591250 CTGGCTGCGAAGAAAGCCAGGACAT 2591226
>seq24
Length=8999101
Score = 84.2 bits (92), Expect = 3e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || || | || || | ||||| || || || || | || |||||
Sbjct 2890729 AAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCC 2890670
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| |||| ||| || |||||| || || || |||||||||||||| ||||| ||
Sbjct 2890669 TCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 2890610
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| ||| | |||||| ||| || |||||||| |||||| ||| | || || ||
Sbjct 2890609 CAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTAC 2890550
Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| || || ||| ||| | || |||||| | || || ||| | | || ||||
Sbjct 2890549 AACAT-TCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGGTG 2890498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731818911834800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |