Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq602 93.3 8e-14
seq556 87.8 4e-12
>seq602
Length=1640730
Score = 93.3 bits (102), Expect = 8e-14
Identities = 167/244 (68%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 49822 AACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 49881
|||| ||||||||| ||| | ||||| || || || | | |||| ||| || |
Sbjct 122450 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATGTAA 122509
Query 49882 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941
|| ||||| ||||||| || || ||||| ||||| ||||||||| |||||||||||
Sbjct 122510 GACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAAAGA 122569
Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 50001
| || || || || ||||| |||| || | | ||||| | | || | ||
Sbjct 122570 AGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGTCCC 122629
Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061
||||||| | ||||||||||| || || || | | |||| || | || ||||| |
Sbjct 122630 CAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 122689
Query 50062 TAAA 50065
| ||
Sbjct 122690 TGAA 122693
>seq556
Length=1594741
Score = 87.8 bits (96), Expect = 4e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| || | |||||| | |||||| |||| ||| || |||||||| || || |||||||
Sbjct 329541 CATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTT 329600
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || ||| || || |||| | |||||| ||||| || || |||| ||
Sbjct 329601 TATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAGAAA 329660
Query 192500 T 192500
|
Sbjct 329661 T 329661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984406802989050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |