Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq602 93.3 8e-14 seq556 87.8 4e-12 >seq602 Length=1640730 Score = 93.3 bits (102), Expect = 8e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 49822 AACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 49881 |||| ||||||||| ||| | ||||| || || || | | |||| ||| || | Sbjct 122450 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATGTAA 122509 Query 49882 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941 || ||||| ||||||| || || ||||| ||||| ||||||||| ||||||||||| Sbjct 122510 GACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAAAGA 122569 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 50001 | || || || || ||||| |||| || | | ||||| | | || | || Sbjct 122570 AGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGTCCC 122629 Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||||| | ||||||||||| || || || | | |||| || | || ||||| | Sbjct 122630 CAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 122689 Query 50062 TAAA 50065 | || Sbjct 122690 TGAA 122693 >seq556 Length=1594741 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | |||||| | |||||| |||| ||| || |||||||| || || ||||||| Sbjct 329541 CATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTT 329600 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || ||| || || |||| | |||||| ||||| || || |||| || Sbjct 329601 TATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAGAAA 329660 Query 192500 T 192500 | Sbjct 329661 T 329661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984406802989050