Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq24 100 5e-16
seq602 98.7 2e-15
seq556 89.7 9e-13
>seq24
Length=8999101
Score = 100 bits (110), Expect = 5e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | |||| || || | ||| | || | ||| || ||| ||
Sbjct 2890490 TTTCTTAGCACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTT 2890549
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || | || | | || |||| || || ||||||||||| | | || ||
Sbjct 2890550 GTAGTCCGACAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTG 2890609
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
|||||| || || ||||||||||| || || || ||| ||||| ||||||||||||
Sbjct 2890610 GTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGA 2890669
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| || || || || || ||||| || ||||| | || || | ||| |||||||| ||
Sbjct 2890670 GGGCTCGACCTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq602
Length=1640730
Score = 98.7 bits (108), Expect = 2e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183
|||| |||||||| ||| | || || || || || | | |||| ||| || |
Sbjct 122450 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATGTAA 122509
Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243
|| ||||| ||||||| || || ||||| ||||| ||||||||| |||||||||||
Sbjct 122510 GACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAAAGA 122569
Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303
| || || ||||| ||||| |||| || | | ||||| | | || | ||
Sbjct 122570 AGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGTCCC 122629
Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363
|||||||| | |||||||||||| || || || | | |||| || | || ||||| |
Sbjct 122630 CAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 122689
Query 39364 TAAA 39367
| ||
Sbjct 122690 TGAA 122693
>seq556
Length=1594741
Score = 89.7 bits (98), Expect = 9e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || | |||||| | ||||||||||| ||| || || ||||| || || |||||||||
Sbjct 329543 TCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTA 329602
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT 172033
|| || || || ||| || || |||| |||||||| ||||| || || |||| |||
Sbjct 329603 TCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAGAAAT 329661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905070343697400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |