Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq24 100 5e-16 seq602 98.7 2e-15 seq556 89.7 9e-13 >seq24 Length=8999101 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || | ||| | || | ||| || ||| || Sbjct 2890490 TTTCTTAGCACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTT 2890549 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | || | | || |||| || || ||||||||||| | | || || Sbjct 2890550 GTAGTCCGACAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTG 2890609 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| || || ||||||||||| || || || ||| ||||| |||||||||||| Sbjct 2890610 GTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGA 2890669 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || || || ||||| || ||||| | || || | ||| |||||||| || Sbjct 2890670 GGGCTCGACCTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq602 Length=1640730 Score = 98.7 bits (108), Expect = 2e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 |||| |||||||| ||| | || || || || || | | |||| ||| || | Sbjct 122450 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATGTAA 122509 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 || ||||| ||||||| || || ||||| ||||| ||||||||| ||||||||||| Sbjct 122510 GACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAAAGA 122569 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 | || || ||||| ||||| |||| || | | ||||| | | || | || Sbjct 122570 AGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGTCCC 122629 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||||| | |||||||||||| || || || | | |||| || | || ||||| | Sbjct 122630 CAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 122689 Query 39364 TAAA 39367 | || Sbjct 122690 TGAA 122693 >seq556 Length=1594741 Score = 89.7 bits (98), Expect = 9e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| | ||||||||||| ||| || || ||||| || || ||||||||| Sbjct 329543 TCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTA 329602 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT 172033 || || || || ||| || || |||| |||||||| ||||| || || |||| ||| Sbjct 329603 TCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAGAAAT 329661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905070343697400