Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq602 105 2e-17
seq418 84.2 6e-11
seq204 84.2 6e-11
>seq602
Length=1640730
Score = 105 bits (116), Expect = 2e-17
Identities = 376/576 (65%), Gaps = 14/576 (2%)
Strand=Plus/Minus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
||||| || || || || || || | || || |||||||||||||| || | |
Sbjct 123035 TTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCC 122976
Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAGCCC 133193
| ||||||||| | || || || | ||||| ||| |||| |||||||| ||||
Sbjct 122975 TCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAG--CACTGGGAGGCCC 122918
Query 133194 TTACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252
| | || || | | ||||||| | | ||| | | || ||||| || || ||||||
Sbjct 122917 TGAAACCTGAGGAGAGATATTTTATATCCCATG-TGCTTGCTTTTTTCGCGGCCAGTGAT 122859
Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312
|| || || |||||| || | | ||||||| ||||||||| | | ||||||
Sbjct 122858 GGAATAGTGAATGAAAACTTGGTGAAGCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCC 122799
Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370
| || ||||| | |||||||| |||||||| || || ||| | | | |||
Sbjct 122798 TGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTC 122739
Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTA 133430
||| || ||||||||||| ||| || || ||| | | || |||||||| |||
Sbjct 122738 CTC--ATCGATACTTACATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATT- 122682
Query 133431 GCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAG 133489
| || | | |||||| | || ||||| | || ||||| | | ||||| ||||||
Sbjct 122681 GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAA 122622
Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549
|| | | || || | || || ||||| | ||| || || || || || |
Sbjct 122621 GAAGCCACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCT 122562
Query 133550 GGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608
|| | || ||| || || || ||||| || || || || | | ||||| || ||
Sbjct 122561 AGTTC-TTTTGCATCCATATTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATT 122503
Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644
||| || | ||| ||| || || |||| ||| ||
Sbjct 122502 TTCGAATGCACTAATTAGCAGAGATGAGGGACTCCA 122467
>seq418
Length=2079112
Score = 84.2 bits (92), Expect = 6e-11
Identities = 263/398 (66%), Gaps = 17/398 (4%)
Strand=Plus/Minus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
||||| || || || || | || | || ||||||||||||||||| ||| | | |
Sbjct 761953 TTTGTCATCTTTCCCATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCCGAGGCT 761894
Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAGCCC 133193
| | ||||||| | || || || | ||||| ||| |||| |||||||| ||||
Sbjct 761893 TCACTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAG--CACTGGGAGGCCC 761836
Query 133194 TTACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252
| | || || | | ||||||| | | ||| | | || || || || || ||||||
Sbjct 761835 TGAAACCTGAGGAGAGATATTTTATATCCCATG-TGCTGGCTTTCTTCGCGGCCAGTGAT 761777
Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312
|| || || |||||| || | ||||||| ||||||||| | | ||||||
Sbjct 761776 GGCATAGTGAATGAAAACTTTGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCC 761717
Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370
| || ||||| | |||||||| |||||||| || || ||| | | | |||
Sbjct 761716 AGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTC 761657
Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTA 133430
||| || ||||||| |||||| || ||| | | || |||||||| |||
Sbjct 761656 CTC--ATCGATACTT-----AAAGATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATT- 761605
Query 133431 GCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467
| || | | |||||| | || ||||| | || |||||
Sbjct 761604 GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGC 761567
>seq204
Length=3582855
Score = 84.2 bits (92), Expect = 6e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946
||| | || ||||| || || ||||| ||| | | | ||| | ||| || ||||||
Sbjct 849671 GCTTCACCTGAGGACATTAAAAAGGCTTATCATAAAGTGGCACTAAAATGGCACCCTGAT 849612
Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006
||||||||||| ||||||| ||| |||||| | ||||||||||| | | | || |||
Sbjct 849611 AAAAATCCAGAAAATAAAGAAGAAGCAGAGAAAAAATTCAAAGAAGTAGCAGAGGCCTAT 849552
Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030
|| | || ||||| | ||||||
Sbjct 849551 GAGGTATTATCAAATGATGAAAAA 849528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471708168981611
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |