Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq602 105 2e-17 seq418 84.2 6e-11 seq204 84.2 6e-11 >seq602 Length=1640730 Score = 105 bits (116), Expect = 2e-17 Identities = 376/576 (65%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || || || | || || |||||||||||||| || | | Sbjct 123035 TTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCC 122976 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAGCCC 133193 | ||||||||| | || || || | ||||| ||| |||| |||||||| |||| Sbjct 122975 TCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAG--CACTGGGAGGCCC 122918 Query 133194 TTACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || | | ||||||| | | ||| | | || ||||| || || |||||| Sbjct 122917 TGAAACCTGAGGAGAGATATTTTATATCCCATG-TGCTTGCTTTTTTCGCGGCCAGTGAT 122859 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | | ||||||| ||||||||| | | |||||| Sbjct 122858 GGAATAGTGAATGAAAACTTGGTGAAGCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCC 122799 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370 | || ||||| | |||||||| |||||||| || || ||| | | | ||| Sbjct 122798 TGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTC 122739 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTA 133430 ||| || ||||||||||| ||| || || ||| | | || |||||||| ||| Sbjct 122738 CTC--ATCGATACTTACATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATT- 122682 Query 133431 GCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAG 133489 | || | | |||||| | || ||||| | || ||||| | | ||||| |||||| Sbjct 122681 GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAA 122622 Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549 || | | || || | || || ||||| | ||| || || || || || | Sbjct 122621 GAAGCCACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCT 122562 Query 133550 GGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 || | || ||| || || || ||||| || || || || | | ||||| || || Sbjct 122561 AGTTC-TTTTGCATCCATATTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATT 122503 Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 ||| || | ||| ||| || || |||| ||| || Sbjct 122502 TTCGAATGCACTAATTAGCAGAGATGAGGGACTCCA 122467 >seq418 Length=2079112 Score = 84.2 bits (92), Expect = 6e-11 Identities = 263/398 (66%), Gaps = 17/398 (4%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 761953 TTTGTCATCTTTCCCATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCCGAGGCT 761894 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAGCCC 133193 | | ||||||| | || || || | ||||| ||| |||| |||||||| |||| Sbjct 761893 TCACTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAG--CACTGGGAGGCCC 761836 Query 133194 TTACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || | | ||||||| | | ||| | | || || || || || |||||| Sbjct 761835 TGAAACCTGAGGAGAGATATTTTATATCCCATG-TGCTGGCTTTCTTCGCGGCCAGTGAT 761777 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | ||||||| ||||||||| | | |||||| Sbjct 761776 GGCATAGTGAATGAAAACTTTGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCC 761717 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370 | || ||||| | |||||||| |||||||| || || ||| | | | ||| Sbjct 761716 AGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTC 761657 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTA 133430 ||| || ||||||| |||||| || ||| | | || |||||||| ||| Sbjct 761656 CTC--ATCGATACTT-----AAAGATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATT- 761605 Query 133431 GCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | || | | |||||| | || ||||| | || ||||| Sbjct 761604 GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGC 761567 >seq204 Length=3582855 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | | ||| | ||| || |||||| Sbjct 849671 GCTTCACCTGAGGACATTAAAAAGGCTTATCATAAAGTGGCACTAAAATGGCACCCTGAT 849612 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| |||||| | ||||||||||| | | | || ||| Sbjct 849611 AAAAATCCAGAAAATAAAGAAGAAGCAGAGAAAAAATTCAAAGAAGTAGCAGAGGCCTAT 849552 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 || | || ||||| | |||||| Sbjct 849551 GAGGTATTATCAAATGATGAAAAA 849528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471708168981611