Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq24 127 2e-24 seq39 82.4 7e-11 >seq24 Length=8999101 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || |||||||| || || || | Sbjct 2890727 GATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTC 2890668 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| | || ||| |||||||| || |||||||| || ||||| || || Sbjct 2890667 AGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 2890608 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| |||| ||||| || || |||||||| ||| | | |||| || || || Sbjct 2890607 GCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAA 2890548 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || ||||| || | || ||| || |||| || || Sbjct 2890547 CATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500 >seq39 Length=7040410 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||||||||| || || ||||| || || || Sbjct 3825807 ACAATGCAGATCTTCGTGAAGACCCTGACCGGTAAAACCATCACTCTCGAGGTGGAGCCC 3825866 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 3825867 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 3825926 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||||| Sbjct 3825927 CAGCAGAGGCTGATCTTTGCCGG 3825949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449864965552840