Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq24 109 4e-19
seq412 107 1e-18
seq729 102 5e-17
seq1416 91.5 1e-13
>seq24
Length=8999101
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| ||| |||||| |||||||| |||||||| || | || ||
Sbjct 2890512 CTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCA 2890571
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||| ||||| || || || ||||| ||||||||||| | || | || || ||
Sbjct 2890572 TCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTA 2890631
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || ||| || |||| | || || |||||| || | || |||
Sbjct 2890632 TCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATG 2890691
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || ||||||||||| || || ||||||||
Sbjct 2890692 GTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq412
Length=2039319
Score = 107 bits (118), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | |||| ||||||||| || || ||||| ||
Sbjct 1106562 CCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGAC 1106621
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
| ||| |||| ||||| ||||| || || |||||||| | ||||||||| | ||
Sbjct 1106622 ACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGT 1106681
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| |||||| |||| | || ||| ||||| || || || | ||| ||| ||| |
Sbjct 1106682 ATGCCCTCC-TGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 1106738
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| || | ||| |||||||| || | ||||||||
Sbjct 1106739 CCTCGAGGGTGATGGTCTTACCAATCAGGGTCTT 1106772
>seq729
Length=1207513
Score = 102 bits (112), Expect = 5e-17
Identities = 164/230 (71%), Gaps = 7/230 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| ||| |||||||| | |||| ||||||||| ||||| ||||| ||
Sbjct 71464 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 71405
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| | | ||||| ||||| ||||| | ||| ||| |||||| |||| ||| | ||
Sbjct 71404 AGGG-GTGTTCATCTTCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGGG 71346
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGA 34928
| |||||||||| | || || ||| || || || | | ||| ||| ||| |
Sbjct 71345 ATAACCTCCTTGTCCTGGATCTTGGCTTTAAC--ATTCTCAGTGGTGTCACTGGGCTCCA 71288
Query 34929 CATCA-ACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| | ||| |||||||| | || | |||||||| |||||||||||
Sbjct 71287 -ATCTGATGGTAATGGTCTTACTGGTCATGGTCTTTAAGAAGATCTGCAT 71239
>seq1416
Length=126746
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | |||| ||||||||| | ||| ||||| ||
Sbjct 47974 CCACCCCTCAGGCACAGGACCAGGTTCAGGGTGGACTCCTTCTGGAGGTTGTAGTCAGAC 48033
Query 34811 AGGCTGCGCTCATCGTCC-AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| |||| ||| || |||||||| || |||||||| | |||||||| | ||
Sbjct 48034 AGGGTGCGTACATCTTCCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 48093
Query 34870 CACCCCCTCCTT 34881
| ||||||||
Sbjct 48094 -ATACCCTCCTT 48104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325669765682057
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |