Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq24 109 4e-19 seq412 107 1e-18 seq729 102 5e-17 seq1416 91.5 1e-13 >seq24 Length=8999101 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| |||||||| |||||||| || | || || Sbjct 2890512 CTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCA 2890571 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || || || ||||| ||||||||||| | || | || || || Sbjct 2890572 TCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTA 2890631 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||| || |||| | || || |||||| || | || ||| Sbjct 2890632 TCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATG 2890691 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| || || |||||||| Sbjct 2890692 GTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq412 Length=2039319 Score = 107 bits (118), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||||||||| || || ||||| || Sbjct 1106562 CCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGAC 1106621 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | ||| |||| ||||| ||||| || || |||||||| | ||||||||| | || Sbjct 1106622 ACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGT 1106681 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | |||||| |||| | || ||| ||||| || || || | ||| ||| ||| | Sbjct 1106682 ATGCCCTCC-TGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 1106738 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | || | ||| |||||||| || | |||||||| Sbjct 1106739 CCTCGAGGGTGATGGTCTTACCAATCAGGGTCTT 1106772 >seq729 Length=1207513 Score = 102 bits (112), Expect = 5e-17 Identities = 164/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| ||| |||||||| | |||| ||||||||| ||||| ||||| || Sbjct 71464 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 71405 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | ||||| ||||| ||||| | ||| ||| |||||| |||| ||| | || Sbjct 71404 AGGG-GTGTTCATCTTCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGGG 71346 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGA 34928 | |||||||||| | || || ||| || || || | | ||| ||| ||| | Sbjct 71345 ATAACCTCCTTGTCCTGGATCTTGGCTTTAAC--ATTCTCAGTGGTGTCACTGGGCTCCA 71288 Query 34929 CATCA-ACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| | ||| |||||||| | || | |||||||| ||||||||||| Sbjct 71287 -ATCTGATGGTAATGGTCTTACTGGTCATGGTCTTTAAGAAGATCTGCAT 71239 >seq1416 Length=126746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||||||||| | ||| ||||| || Sbjct 47974 CCACCCCTCAGGCACAGGACCAGGTTCAGGGTGGACTCCTTCTGGAGGTTGTAGTCAGAC 48033 Query 34811 AGGCTGCGCTCATCGTCC-AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| ||| || |||||||| || |||||||| | |||||||| | || Sbjct 48034 AGGGTGCGTACATCTTCCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 48093 Query 34870 CACCCCCTCCTT 34881 | |||||||| Sbjct 48094 -ATACCCTCCTT 48104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669765682057