Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 >seq24 Length=8999101 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || |||| | || | ||| || || || Sbjct 2890523 ATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATCTTCCAGCTG 2890582 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| | |||||| || || ||||| || ||||| || || | || Sbjct 2890583 CTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTT 2890642 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 ||| ||| | |||| ||| || || | || || || || || || || || ||||| Sbjct 2890643 GGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCTTCCCAGT 2890702 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || || || |||||||| || Sbjct 2890703 GAGGGTCTTCACGAAAATCTGCATCTT 2890729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385191955733223