Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq409 129 4e-24
seq503 107 1e-17
seq578 95.1 9e-14
seq42 87.8 1e-11
>seq409
Length=2050159
Score = 129 bits (142), Expect = 4e-24
Identities = 362/545 (66%), Gaps = 12/545 (2%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| || ||||| |||||||| || | | | || | || ||| ||||||||
Sbjct 860429 GCACCATAAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTCAATTCTTTCCCATTGAAG 860370
Query 281837 AAATT-TGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894
|| | || || ||| | ||| | ||| || ||||||| || || || || || ||||
Sbjct 860369 AAGTCCTGTAA-AAGCT-TCTGAATCTTGGGGATACGAGTAGAACCACCCACCAAGACAA 860312
Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954
| ||||| | ||| ||||| || || || | |||| | ||||||| || || || |
Sbjct 860311 TGTCATGAATCTGGGATTTGTCAAGCTTGGCATCCCGAAGGGCTTTTTCTACTGGATCCA 860252
Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014
| | | |||||||| | | | |||||| ||| || | |||| | | |
Sbjct 860251 GGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAATCGGGCCCGGGTAATGGAGGTGT 860192
Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074
||||||||||||| ||| ||||||| |||||| | | || || ||||| |
Sbjct 860191 AGAAATCAATTCCTTCATACAGGGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGAGA 860132
Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTG 282132
||| ||| || ||||||||||| || || | ||| | || | || || ||| | |
Sbjct 860131 GTGTACGCTTTGCACGTTCACAAGCAGTACGTAGGCGGCGGACAGCCCTCTTGTT--CTC 860074
Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 282190
| | | || | || | || | ||||| ||| ||| | | ||| | || | |||
Sbjct 860073 ACTTATGTCCTTCTTGTGCTTGCGTTTGAATTCTGCAATAAA--ATGGTTGACCATTCGA 860016
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250
|| ||||| ||||| || ||||| | || | ||||| |||| | | |||| || |
Sbjct 860015 TTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCTGCTGTAGATTTGACTTCAAAGATC 859956
Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310
|||||||||| || | || | |||||| || || || |||| ||||| || ||
Sbjct 859955 CCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCTCCTCCCAAGTCAAAGATCAGC 859896
Query 282311 ACATT 282315
|||||
Sbjct 859895 ACATT 859891
Score = 116 bits (128), Expect = 3e-20
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|||||||| | ||||| |||| |||||||||||||| |||||||| ||||| | |||
Sbjct 859787 TTTTTATCCAAGCCATAAGCAATGGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACA 859728
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| | || |||||||| || || || | ||| || || || || |||
Sbjct 859727 TTCAGACCAGCAATAGTCCCAGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAT 859668
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| || || | |||||||
Sbjct 859667 GCAGGTACTGTGACCACGGCAT 859646
>seq503
Length=1718272
Score = 107 bits (118), Expect = 1e-17
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || |||| |||||||| |||||||||||||| ||| | || |||||| |
Sbjct 794662 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACATTGGCTGTTTCGGGCCTTGGT 794603
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | ||||| || |||||||||||||||||| | | |||||| |
Sbjct 794602 GTGGTTGGCAGAGACAAATATGGGGTATTCCCACTTAGAGGAAAAATACTCAATGTTCGA 794543
Query 400417 GATGCTAGTCCTAA 400430
|| ||| || |||
Sbjct 794542 GAAGCTTCTCATAA 794529
>seq578
Length=1461024
Score = 95.1 bits (104), Expect = 9e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 131177 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 131236
|| ||||| || ||||||||||| ||||| ||||||||| | || || | || |||
Sbjct 1101748 GTCGTAGCTACCATAGCATTTGGAATGGGCATTAATAAAGCCGACATTCGTAAAGTCATT 1101807
Query 131237 CATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 131296
||||| || ||||| ||| | || ||| ||||| || || ||||||||||| || |||
Sbjct 1101808 CATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGT 1101867
Query 131297 GATGG 131301
|||||
Sbjct 1101868 GATGG 1101872
>seq42
Length=7019203
Score = 87.8 bits (96), Expect = 1e-11
Identities = 205/307 (67%), Gaps = 18/307 (6%)
Strand=Plus/Plus
Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAATT 281324
|||| ||||||||| | | ||||| | | || ||| || || | || |||| |
Sbjct 5603638 TTTCCAATTCATTTCTTGTATCAATACGCTCCTTGAGCTTTTTGTCCTCCTCAGCAAACT 5603697
Query 281325 CTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT----- 281379
| || || ||| |||||| ||||||| |||||| | || ||||||
Sbjct 5603698 TCTCGGCATCATTAACCATTCTTTCAATTT---CTTCAGG---TGTTAGGCGATTCTGGT 5603751
Query 281380 -ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 281435
||| ||||| || || || || |||||| ||| ||| || |||| |||||
Sbjct 5603752 CATTGGTAATTGTGATCTTGTT---TTTGTTGCCTGTACCTTTGTCTTCGGCTGTCACTC 5603808
Query 281436 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 281495
| ||||| ||||| |||| | ||||| ||||||||||| || |||||||| | |||
Sbjct 5603809 TGAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 5603868
Query 281496 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555
|||| || || || || | ||| |||||||| | ||| ||||| || | ||
Sbjct 5603869 CAGGAGGAATTCCAGTCAGGTCAAAAGTTCCCAGGAGGTGATTGTCTTTTGTCAGGGGTC 5603928
Query 281556 GTTCACC 281562
|||||||
Sbjct 5603929 GTTCACC 5603935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740345497223478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |