Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq409 129 4e-24 seq503 107 1e-17 seq578 95.1 9e-14 seq42 87.8 1e-11 >seq409 Length=2050159 Score = 129 bits (142), Expect = 4e-24 Identities = 362/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||| |||||||| || | | | || | || ||| |||||||| Sbjct 860429 GCACCATAAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTCAATTCTTTCCCATTGAAG 860370 Query 281837 AAATT-TGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | || || ||| | ||| | ||| || ||||||| || || || || || |||| Sbjct 860369 AAGTCCTGTAA-AAGCT-TCTGAATCTTGGGGATACGAGTAGAACCACCCACCAAGACAA 860312 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 | ||||| | ||| ||||| || || || | |||| | ||||||| || || || | Sbjct 860311 TGTCATGAATCTGGGATTTGTCAAGCTTGGCATCCCGAAGGGCTTTTTCTACTGGATCCA 860252 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | | |||||||| | | | |||||| ||| || | |||| | | | Sbjct 860251 GGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAATCGGGCCCGGGTAATGGAGGTGT 860192 Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074 ||||||||||||| ||| ||||||| |||||| | | || || ||||| | Sbjct 860191 AGAAATCAATTCCTTCATACAGGGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGAGA 860132 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTG 282132 ||| ||| || ||||||||||| || || | ||| | || | || || ||| | | Sbjct 860131 GTGTACGCTTTGCACGTTCACAAGCAGTACGTAGGCGGCGGACAGCCCTCTTGTT--CTC 860074 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 282190 | | | || | || | || | ||||| ||| ||| | | ||| | || | ||| Sbjct 860073 ACTTATGTCCTTCTTGTGCTTGCGTTTGAATTCTGCAATAAA--ATGGTTGACCATTCGA 860016 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| ||||| || ||||| | || | ||||| |||| | | |||| || | Sbjct 860015 TTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCTGCTGTAGATTTGACTTCAAAGATC 859956 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 |||||||||| || | || | |||||| || || || |||| ||||| || || Sbjct 859955 CCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCTCCTCCCAAGTCAAAGATCAGC 859896 Query 282311 ACATT 282315 ||||| Sbjct 859895 ACATT 859891 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | ||||| |||| |||||||||||||| |||||||| ||||| | ||| Sbjct 859787 TTTTTATCCAAGCCATAAGCAATGGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACA 859728 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| | || |||||||| || || || | ||| || || || || ||| Sbjct 859727 TTCAGACCAGCAATAGTCCCAGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAT 859668 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | ||||||| Sbjct 859667 GCAGGTACTGTGACCACGGCAT 859646 >seq503 Length=1718272 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| |||||||| |||||||||||||| ||| | || |||||| | Sbjct 794662 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACATTGGCTGTTTCGGGCCTTGGT 794603 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| || |||||||||||||||||| | | |||||| | Sbjct 794602 GTGGTTGGCAGAGACAAATATGGGGTATTCCCACTTAGAGGAAAAATACTCAATGTTCGA 794543 Query 400417 GATGCTAGTCCTAA 400430 || ||| || ||| Sbjct 794542 GAAGCTTCTCATAA 794529 >seq578 Length=1461024 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131177 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 131236 || ||||| || ||||||||||| ||||| ||||||||| | || || | || ||| Sbjct 1101748 GTCGTAGCTACCATAGCATTTGGAATGGGCATTAATAAAGCCGACATTCGTAAAGTCATT 1101807 Query 131237 CATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 131296 ||||| || ||||| ||| | || ||| ||||| || || ||||||||||| || ||| Sbjct 1101808 CATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGT 1101867 Query 131297 GATGG 131301 ||||| Sbjct 1101868 GATGG 1101872 >seq42 Length=7019203 Score = 87.8 bits (96), Expect = 1e-11 Identities = 205/307 (67%), Gaps = 18/307 (6%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAATT 281324 |||| ||||||||| | | ||||| | | || ||| || || | || |||| | Sbjct 5603638 TTTCCAATTCATTTCTTGTATCAATACGCTCCTTGAGCTTTTTGTCCTCCTCAGCAAACT 5603697 Query 281325 CTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT----- 281379 | || || ||| |||||| ||||||| |||||| | || |||||| Sbjct 5603698 TCTCGGCATCATTAACCATTCTTTCAATTT---CTTCAGG---TGTTAGGCGATTCTGGT 5603751 Query 281380 -ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 281435 ||| ||||| || || || || |||||| ||| ||| || |||| ||||| Sbjct 5603752 CATTGGTAATTGTGATCTTGTT---TTTGTTGCCTGTACCTTTGTCTTCGGCTGTCACTC 5603808 Query 281436 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 281495 | ||||| ||||| |||| | ||||| ||||||||||| || |||||||| | ||| Sbjct 5603809 TGAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 5603868 Query 281496 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555 |||| || || || || | ||| |||||||| | ||| ||||| || | || Sbjct 5603869 CAGGAGGAATTCCAGTCAGGTCAAAAGTTCCCAGGAGGTGATTGTCTTTTGTCAGGGGTC 5603928 Query 281556 GTTCACC 281562 ||||||| Sbjct 5603929 GTTCACC 5603935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740345497223478