Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq692 96.9 3e-15 >seq692 Length=1356280 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 ||||||||||| || |||||||| || ||||| ||||| ||||| | | | | ||| Sbjct 23030 TTTATGTATTACGTGAATGATGGAGTGTATGGATCATTTAATTGCATCCTTTATGATCAT 23089 Query 21065 GCTC--GTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTT 21121 || | ||| | |||| | |||| || ||| | || || || || | ||| Sbjct 23090 GCACACGTC--AAGCCTCTTCTGCAAAAGAGACCCAAACCA-GATGAGAAGTATTATTCA 23146 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || || || ||||| || | || |||||| | ||| | |||||| |||| ||||| || Sbjct 23147 TCCAGTATATGGGGACCAACGTGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACTTG 23206 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAG 21234 || ||| | || ||||| || ||| | | |||||||||||||| ||||| || Sbjct 23207 CCTGAGATGCACGTGGGGGATTGGATGCTCTTTGAAAACATGGGTGCTTATAG 23259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463511975561040