Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq41 113 9e-20
seq608 109 1e-18
seq163 109 1e-18
seq412 107 4e-18
seq335 100 6e-16
seq556 96.9 7e-15
>seq41
Length=6870668
Score = 113 bits (124), Expect = 9e-20
Identities = 154/213 (72%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
|| || | |||||| || | |||| ||| | || || ||||| ||| | | | ||||
Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| || || || ||||||||||| || || || || || | || || |||||||||||
Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATC- 2879734
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|| |||| || || ||||| || || ||||| |||||| ||||||| || || ||
Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| ||| ||||| || || || ||||||
Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCATT 2879827
>seq608
Length=1396534
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666
|||||| || | | |||||| || || || ||||| ||| | | || ||||| | ||
Sbjct 1124029 GTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTG 1123970
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|||||||||||||| || || || ||||| | | || ||||||||||| || |||||
Sbjct 1123969 CTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTGGATCTT 1123910
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| || ||||| || || | |||| | |||| | ||||| || || || ||| | ||
Sbjct 1123909 GGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTTGTCAGT 1123850
Query 82787 CAACGTCTTTACAAATAT 82804
|| |||| ||||| ||
Sbjct 1123849 CAGGATCTTCACAAAGAT 1123832
>seq163
Length=3864798
Score = 109 bits (120), Expect = 1e-18
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
|| || |||||||||| |||||||||||| | || || || || || |||||||| ||
Sbjct 18375 GCTTTGTGGTGGTACTTTATATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 18434
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
|| ||||| || ||||| || ||| | || ||||||||||||| ||| ||||||
Sbjct 18435 CTGAGGAAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTT 18494
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
|| | | ||| | || ||||| ||| |||| ||||| ||||
Sbjct 18495 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACAAG 18537
>seq412
Length=2039319
Score = 107 bits (118), Expect = 4e-18
Identities = 162/229 (71%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || |||| | ||| || | || ||| || || || ||||| || || || |||||
Sbjct 1106561 ACCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGA 1106620
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| | | | || ||||| || || || ||||||||||| || || || || ||||| ||
Sbjct 1106621 CACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1106680
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||| || ||| | || || |||||||| || ||||| || || || ||| | || || ||
Sbjct 1106681 TATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | || || ||||| || ||| ||||| | || |||||||
Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788
>seq335
Length=2667251
Score = 100 bits (110), Expect = 6e-16
Identities = 154/216 (71%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || |||| | || || | ||||||||| |||||||||| || || ||||||
Sbjct 1092663 ACCACCCCTCAGGTGGAGGACCAGGTGCAGAGTCGATTCTTTCTCGATGTTTTAATCATC 1092722
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| || | | || ||||| || || || | ||||||||| || || | ||||| || |
Sbjct 1092723 TGGATAT-TGCCATCTTCCAGCTGCTTGCTAGCAAAGATGAGCCTCTACTGATCAGGGGA 1092781
Query 82703 -TATT-CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || ||||||||||| || ||||| | || | ||| || || |||||||| || ||
Sbjct 1092782 ATGTTGCCTTCCTTATCCTGGATCTTGGTCTTCATATTCTCCATGGTATCATTGGGATCC 1092841
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796
|||| || | || || ||||| ||| ||||||
Sbjct 1092842 ACTTGCAGGATGATGGTTTTGCCAATCAGGGTCTTT 1092877
>seq556
Length=1594741
Score = 96.9 bits (106), Expect = 7e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| |||||||||||||| | |||||| ||||||||||| ||||| ||||| || |||||
Sbjct 329540 CCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCT 329599
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
||||| || ||||| ||||| || || | || |||||
Sbjct 329600 TTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATC 329637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981754200227217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |