Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq41 113 9e-20 seq608 109 1e-18 seq163 109 1e-18 seq412 107 4e-18 seq335 100 6e-16 seq556 96.9 7e-15 >seq41 Length=6870668 Score = 113 bits (124), Expect = 9e-20 Identities = 154/213 (72%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | |||||| || | |||| ||| | || || ||||| ||| | | | |||| Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||||||||| || || || || || | || || ||||||||||| Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATC- 2879734 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||| || || ||||| || || ||||| |||||| ||||||| || || || Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||| ||||| || || || |||||| Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCATT 2879827 >seq608 Length=1396534 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||| || | | |||||| || || || ||||| ||| | | || ||||| | || Sbjct 1124029 GTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTG 1123970 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 |||||||||||||| || || || ||||| | | || ||||||||||| || ||||| Sbjct 1123969 CTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTGGATCTT 1123910 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || || | |||| | |||| | ||||| || || || ||| | || Sbjct 1123909 GGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTTGTCAGT 1123850 Query 82787 CAACGTCTTTACAAATAT 82804 || |||| ||||| || Sbjct 1123849 CAGGATCTTCACAAAGAT 1123832 >seq163 Length=3864798 Score = 109 bits (120), Expect = 1e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || || |||||||||| |||||||||||| | || || || || || |||||||| || Sbjct 18375 GCTTTGTGGTGGTACTTTATATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 18434 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||| | || ||||||||||||| ||| |||||| Sbjct 18435 CTGAGGAAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTT 18494 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || | | ||| | || ||||| ||| |||| ||||| |||| Sbjct 18495 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACAAG 18537 >seq412 Length=2039319 Score = 107 bits (118), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| | ||| || | || ||| || || || ||||| || || || ||||| Sbjct 1106561 ACCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGA 1106620 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | || ||||| || || || ||||||||||| || || || || ||||| || Sbjct 1106621 CACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1106680 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||| || ||| | || || |||||||| || ||||| || || || ||| | || || || Sbjct 1106681 TATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || ||| ||||| | || ||||||| Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788 >seq335 Length=2667251 Score = 100 bits (110), Expect = 6e-16 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| | || || | ||||||||| |||||||||| || || |||||| Sbjct 1092663 ACCACCCCTCAGGTGGAGGACCAGGTGCAGAGTCGATTCTTTCTCGATGTTTTAATCATC 1092722 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | || | | || ||||| || || || | ||||||||| || || | ||||| || | Sbjct 1092723 TGGATAT-TGCCATCTTCCAGCTGCTTGCTAGCAAAGATGAGCCTCTACTGATCAGGGGA 1092781 Query 82703 -TATT-CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||||||||| || ||||| | || | ||| || || |||||||| || || Sbjct 1092782 ATGTTGCCTTCCTTATCCTGGATCTTGGTCTTCATATTCTCCATGGTATCATTGGGATCC 1092841 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 |||| || | || || ||||| ||| |||||| Sbjct 1092842 ACTTGCAGGATGATGGTTTTGCCAATCAGGGTCTTT 1092877 >seq556 Length=1594741 Score = 96.9 bits (106), Expect = 7e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || |||||||||||||| | |||||| ||||||||||| ||||| ||||| || ||||| Sbjct 329540 CCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCT 329599 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || ||||| ||||| || || | || ||||| Sbjct 329600 TTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATC 329637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754200227217