Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq412 111 2e-19 seq41 100 3e-16 seq24 98.7 1e-15 seq154 89.7 5e-13 seq98 87.8 2e-12 seq388 82.4 7e-11 seq339 82.4 7e-11 >seq412 Length=2039319 Score = 111 bits (122), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 1106591 GGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCC 1106650 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || ||||| ||| |||| ||||||| ||| Sbjct 1106651 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTT 1106709 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| |||| ||||| ||| || || |||| || Sbjct 1106710 GACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGT 1106769 Query 133643 TTTTACGAAAATCTGCAT 133660 || | ||| |||||| Sbjct 1106770 CTTCATGAACTGCTGCAT 1106787 >seq41 Length=6870668 Score = 100 bits (110), Expect = 3e-16 Identities = 117/156 (75%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| || | ||||||| ||||||||||| |||||||||||||| Sbjct 2879674 GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTT 2879731 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || | | |||| ||| | | ||| | || ||| | || | ||| || | ||||| Sbjct 2879732 ATCTG-GGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGAT 2879790 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| |||| || || ||||| || ||||| Sbjct 2879791 GGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCAT 2879826 >seq24 Length=8999101 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| || || || ||||| || || || | || || ||||||||||| Sbjct 2890530 GTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATCTTCCAGCTGCTTGCCA 2890589 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| || || |||||||| ||||| |||||||| || || |||||| || Sbjct 2890590 GCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCTTTC 2890649 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | || || | |||||| || |||| |||| ||| || || || || || Sbjct 2890650 ACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCTTCCCAGTGAGGGTC 2890709 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 2890710 TTCACGAAAATCTGCAT 2890726 >seq154 Length=4102096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/167 (72%), Gaps = 9/167 (5%) Strand=Plus/Plus Query 133503 GAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCC---GCTGCTGGTCG----GGAGGG-- 133553 ||||| || |||||||||||| | | ||||||| ||||||||| | || ||| Sbjct 1216777 GAGTCTTCCAGCTGCTTGCCCTCAAAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGA 1216836 Query 133554 ATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACG 133613 ||||||||||| | |||||| ||| | | ||| | || || |||||||||| Sbjct 1216837 ATGCCTTCCTTATTCTGGATCTTGGCCTTCATTTTCTCGATGGTATCACTGGGCTCCACT 1216896 Query 133614 TCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | ||||| ||| |||||||||| || || | ||| |||||||| Sbjct 1216897 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCATGAAGATCTGCAT 1216943 >seq98 Length=4884892 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133548 GGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGC 133607 || |||||||| ||||| || |||||| ||| | | ||| | |||||| ||||| Sbjct 1108507 GGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGC 1108448 Query 133608 TCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || | ||||| ||| ||||||||||| || || ||||| |||||||| Sbjct 1108447 TCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1108395 >seq388 Length=2427621 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||| |||||| || | | ||||| |||||||| ||||||||||||||||| Sbjct 1123357 TCTTCCAGCTTCTTGCCAGCCAAGAAGAGCCTCTGCTGGTTAGGAGGGATGCCTTCCTTA 1123416 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 | |||||| ||| | | |||| || || | |||| ||| || | ||||| | Sbjct 1123417 GCCTGGATCTTAGCCTTCATGTTCTCAGTGGTATCACTAGGCTGCACTTCCAGGGTGATG 1123476 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | || |||||| || | ||| |||||||| Sbjct 1123477 ATCTTCCTGGACAGAGTATTGATGAAGATCTGCAT 1123511 >seq339 Length=2552696 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| | || | ||||||||||||||||||||| |||| ||||| || | Sbjct 2045393 TGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 2045334 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | ||||| | || ||||| |||||||| || Sbjct 2045333 TGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGG 2045294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483385733863720