Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq412 111 2e-19
seq41 100 3e-16
seq24 98.7 1e-15
seq154 89.7 5e-13
seq98 87.8 2e-12
seq388 82.4 7e-11
seq339 82.4 7e-11
>seq412
Length=2039319
Score = 111 bits (122), Expect = 2e-19
Identities = 144/198 (73%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| || || ||| | || || |||||||||||
Sbjct 1106591 GGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCC 1106650
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| ||||||||| || || ||||| ||| |||| ||||||| |||
Sbjct 1106651 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTT 1106709
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||| | ||||| |||||||||| |||| ||||| ||| || || |||| ||
Sbjct 1106710 GACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGT 1106769
Query 133643 TTTTACGAAAATCTGCAT 133660
|| | ||| ||||||
Sbjct 1106770 CTTCATGAACTGCTGCAT 1106787
>seq41
Length=6870668
Score = 100 bits (110), Expect = 3e-16
Identities = 117/156 (75%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||||||||| || | ||||||| ||||||||||| ||||||||||||||
Sbjct 2879674 GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTT 2879731
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| | | |||| ||| | | ||| | || ||| | || | ||| || | |||||
Sbjct 2879732 ATCTG-GGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGAT 2879790
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||| |||| || || ||||| || |||||
Sbjct 2879791 GGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCAT 2879826
>seq24
Length=8999101
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| || || || ||||| || || || | || || |||||||||||
Sbjct 2890530 GTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATCTTCCAGCTGCTTGCCA 2890589
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| |||| || || |||||||| ||||| |||||||| || || |||||| ||
Sbjct 2890590 GCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCTTTC 2890649
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||| | || || | |||||| || |||| |||| ||| || || || || ||
Sbjct 2890650 ACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTCTTCCCAGTGAGGGTC 2890709
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 2890710 TTCACGAAAATCTGCAT 2890726
>seq154
Length=4102096
Score = 89.7 bits (98), Expect = 5e-13
Identities = 121/167 (72%), Gaps = 9/167 (5%)
Strand=Plus/Plus
Query 133503 GAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCC---GCTGCTGGTCG----GGAGGG-- 133553
||||| || |||||||||||| | | ||||||| ||||||||| | || |||
Sbjct 1216777 GAGTCTTCCAGCTGCTTGCCCTCAAAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGA 1216836
Query 133554 ATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACG 133613
||||||||||| | |||||| ||| | | ||| | || || ||||||||||
Sbjct 1216837 ATGCCTTCCTTATTCTGGATCTTGGCCTTCATTTTCTCGATGGTATCACTGGGCTCCACT 1216896
Query 133614 TCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| | ||||| ||| |||||||||| || || | ||| ||||||||
Sbjct 1216897 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCATGAAGATCTGCAT 1216943
>seq98
Length=4884892
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 133548 GGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGC 133607
|| |||||||| ||||| || |||||| ||| | | ||| | |||||| |||||
Sbjct 1108507 GGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGC 1108448
Query 133608 TCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || | ||||| ||| ||||||||||| || || ||||| ||||||||
Sbjct 1108447 TCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1108395
>seq388
Length=2427621
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || |||| |||||| || | | ||||| |||||||| |||||||||||||||||
Sbjct 1123357 TCTTCCAGCTTCTTGCCAGCCAAGAAGAGCCTCTGCTGGTTAGGAGGGATGCCTTCCTTA 1123416
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
| |||||| ||| | | |||| || || | |||| ||| || | ||||| |
Sbjct 1123417 GCCTGGATCTTAGCCTTCATGTTCTCAGTGGTATCACTAGGCTGCACTTCCAGGGTGATG 1123476
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || | || |||||| || | ||| ||||||||
Sbjct 1123477 ATCTTCCTGGACAGAGTATTGATGAAGATCTGCAT 1123511
>seq339
Length=2552696
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
|||||||||| | || | ||||||||||||||||||||| |||| ||||| || |
Sbjct 2045393 TGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 2045334
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||||| | ||||| | || ||||| |||||||| ||
Sbjct 2045333 TGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGG 2045294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483385733863720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |