Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq47 226 3e-54
seq940 107 2e-18
seq52 100 3e-16
>seq47
Length=7047778
Score = 226 bits (250), Expect = 3e-54
Identities = 645/991 (65%), Gaps = 3/991 (0%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||| | ||||| | |||| ||| || | |||||||| || || | ||| ||
Sbjct 6982240 CCAGTGCTTTATGCCTCAGATGCTCATCCAAGCACTGGACGGCAAAGAGGTCAGTGTCTG 6982299
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || || | ||| ||| | | || |||| || | || || |
Sbjct 6982300 TGTCAAACTTATTGGCAAATAAGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCTCCGG 6982356
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| ||||| |||||||| |||| || || || |||| ||||| || | || || |
Sbjct 6982357 CTCCAAACACACACACGGAGCGCAGGTAAACCCCATTGCAAGGCGGGTATGGAGCACCCT 6982416
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| |||| || || |||| |||||||| || ||||||| ||||| ||||||| |
Sbjct 6982417 TGGAAACATTGCCTTCAAAGTACTGCCACTTCACAAACCTAGCAATAGCACGCATGTCAG 6982476
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| | || ||||| || | | |||| | || || || || || | ||||| | |
Sbjct 6982477 ACATATCATACTTATAGCTTAAGGGCAGTGAGCCTGGGACTCCGGGGATCCTCTGAATGG 6982536
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || ||||| || || || || || | ||||||||||||||| ||
Sbjct 6982537 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTGGTCCACTCCATGAACTCGTGGA 6982596
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | || | || || || ||| | || | ||| || || || |
Sbjct 6982597 TTTTTTCATTCTCCAGCACATACCCCACATACTTCCTACTGACTACAAAATAAGCACTGC 6982656
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | |||||||||| |||||| || ||||| | |
Sbjct 6982657 CTGAAAACAGAGGTGTTTCCAAAGGAGGGGGCATTTTGTCAGTCCCTGTGTTCGTCAGCT 6982716
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
|||| | | ||| | | ||| |||| || | | ||| ||| | | ||
Sbjct 6982717 TTCCATTAATGACTTCATAATGCTTTTTCCATCTTTCTTTTTTATTGGCTGGCATTCTTT 6982776
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
|||| || || |||| |||| || | ||| |||| | || || || | ||||
Sbjct 6982777 CGGTTTCCAGGTTGTTTTCACCCATTAATGACTTGAGCTTCCTGACAATTTCCAAGTTGG 6982836
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
| |||| ||||| || |||| |||||||| || | || ||||| | | | | |
Sbjct 6982837 TTTTAATAGGAAAATCCATGCCACAGAGATTTATCAAGTACTTCCAGTCTGTGTTCATGC 6982896
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| || ||| | | |||||| || |||||||| || || ||||| || || ||||| |
Sbjct 6982897 TGTAAAGGTCCCGCATACAGTTGAGGTCGGCCTGAACACGGCTCCAGGATGCATACACCA 6982956
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838
| |||| | |||| | |||||||||| |||||| || || || || ||||||
Sbjct 6982957 CATTCTCTGATTGGCTGGCCAGAAAGACATTGCTGAAACAGGACACAATGCCAGTCACGG 6983016
Query 162839 CCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGG 162898
|| | || || | ||| | || ||||| | ||| || | |||||||||
Sbjct 6983017 AAAGCAAAAAAGAATTCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCC 6983076
Query 162899 CGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAAT 162958
|||||||| || || | || || ||||| || ||||| || || || || || ||||
Sbjct 6983077 TATAGATGGCTCTTAGCAGCCTGTCAAACATTTCAATCTTGTGATGAACTACTATGGAAT 6983136
Query 162959 ACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCC 163018
| ||||| || |||||||||| || || |||| || || ||| ||||| | |
Sbjct 6983137 ATGCTATTGGATACTCAGCCTCTTCTTTGCTAAGAGGTTCTACAATGTATTTGCGATTCT 6983196
Query 163019 TCACAAACGCCGCACAGTCCTCCGTCATGTT 163049
| | ||| | | |||||| ||||||||
Sbjct 6983197 TGATAAAAGATGGACAGTCTCTGGTCATGTT 6983227
>seq940
Length=757995
Score = 107 bits (118), Expect = 2e-18
Identities = 494/772 (64%), Gaps = 15/772 (2%)
Strand=Plus/Minus
Query 176884 TTTTCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCG 176943
|| ||||| ||||||| |||||| | | |||| | || | | || || | |
Sbjct 715630 TTCTCCAGCTAAAGTAACTAAGATACAACTTATTGTTTCTGTCCACCTCCTTCAGATACC 715571
Query 176944 AGGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGT 177003
||| || || | ||||| | ||||| | |||||||||||| | ||| | |||| |
Sbjct 715570 TGGCTAGCTCGCTGGGGGAGTTATAGTCTTCCACGTGAATGAACGAATCTGCTGGGATAT 715511
Query 177004 AATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAG 177063
| || || || || || || || | ||| || || | || || || || |||| || |
Sbjct 715510 AGTTCTCATAGTTTTCCCTGGACGGTCCTAGAACAACAGGGACGGCGCCGGCCAGCAGCG 715451
Query 177064 ATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123
||| || ||||| ||||| || || |||| | |||||| ||||| | ||||| |
Sbjct 715450 CATTGTAAAGCTTTTCCGTAATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAA 715391
Query 177124 ATTTACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181
|||| || | ||||| ||| || || | || | || | ||| || || | |
Sbjct 715390 ATTTGCAAGTAGATATGGTA--GGAATCAGGTTTTTGTCATTCAGATACTCCCCAAACGC 715333
Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCA 177240
| |||| | || || || ||| || || ||||| ||| || || || |
Sbjct 715332 TTGCCCGAAGGTGTGGATCTCAATGCTCTTGCTCAGCTCGTTGTAATA-CTTGACCCGGG 715274
Query 177241 CGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACG 177299
|||| ||| |||||| || || || |||||||| || | ||| |||||||| || ||
Sbjct 715273 CGTGTTCGGGGTTCCAGTTACTCACAACCCAGCACACCAGCTT-CTCTTTGCTCGGCAC- 715216
Query 177300 GGATTCG-ATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATC 177358
|||| | || || | || || | | || | || || ||||| ||||||||
Sbjct 715215 ---TTCGAACACGAAGGAGTTGGTGCTCACGGACAGGAAGCCGTAAGGCACTTGAATATC 715159
Query 177359 CGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGG 177418
||||| || | ||| || | || | ||||| |||| || || || || |||
Sbjct 715158 AGAGTCTCGGCGGTAAGTCAGAGTTAAGTTGAACAGGTGCTCGATGCCGCTCTTCTGGGG 715099
Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478
||| | | || || || | |||||||| ||||| || || |||| || || | |
Sbjct 715098 AGTGTGAGTCGGTGACTCCAGATTCATCCAGATCCATTTCTGGAAGGGCGGCCTAGCCTG 715039
Query 177479 CGTAGGTAGAGT-ATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGG 177537
|| ||| || | | ||| || || || || | |||||| | || || || | ||
Sbjct 715038 CGGAGGCAGGTTGGTCAGG-TCCCAGCTGATGTCCCGGTGGTGGATGAGAACCGCGTGGG 714980
Query 177538 CTTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGC 177597
|||| || | || | ||| ||| | ||||||| | || ||||| || |||
Sbjct 714979 ACTTGTTGTACAGGGAGCGGTCGGTGGTGAGGTGACACCCGCGGATGTTGAACATGGCTT 714920
Query 177598 TACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGAGGAGTAT 177649
|| | | || ||||| | || ||| | |||||| ||||| ||| ||
Sbjct 714919 GGCAGGAGGTGAGGTCAAAGGTCTGTCCGAACGGCCACACCCAGATGAGAAT 714868
>seq52
Length=6537636
Score = 100 bits (110), Expect = 3e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
|| ||||| ||||| || || ||||| | || |||| ||||| ||||||||||| ||
Sbjct 4971672 TTCCCCACCTGACTCTTTGGGTCTTTGAAATGGAGAACACTAGTGACAGATGTAGTTCCA 4971731
Query 171623 TTACGAT-GTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681
|| ||| |||| | | ||| |||||| || || | || ||||| | ||| ||||| ||
Sbjct 4971732 TTGGGATGGTAG-ATGATTTCAGTACTGTTCTCAAAGCCTGATCCAGAAACATTCCATAA 4971790
Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741
|| | ||||||||| | ||| | ||||| ||||| | |||| |||||| || |
Sbjct 4971791 AATCATAGGAGCTGGGCGTGCATTGGCAGAACAAGTAACATTTAGGTGATCTTCAAAAAG 4971850
Query 171742 CTCATAGTG 171750
| ||||||
Sbjct 4971851 TTTATAGTG 4971859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578390041988800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |