Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq47 226 3e-54 seq940 107 2e-18 seq52 100 3e-16 >seq47 Length=7047778 Score = 226 bits (250), Expect = 3e-54 Identities = 645/991 (65%), Gaps = 3/991 (0%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||| | |||| ||| || | |||||||| || || | ||| || Sbjct 6982240 CCAGTGCTTTATGCCTCAGATGCTCATCCAAGCACTGGACGGCAAAGAGGTCAGTGTCTG 6982299 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | ||| ||| | | || |||| || | || || | Sbjct 6982300 TGTCAAACTTATTGGCAAATAAGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCTCCGG 6982356 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| ||||| |||||||| |||| || || || |||| ||||| || | || || | Sbjct 6982357 CTCCAAACACACACACGGAGCGCAGGTAAACCCCATTGCAAGGCGGGTATGGAGCACCCT 6982416 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||| || || |||| |||||||| || ||||||| ||||| ||||||| | Sbjct 6982417 TGGAAACATTGCCTTCAAAGTACTGCCACTTCACAAACCTAGCAATAGCACGCATGTCAG 6982476 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | | || ||||| || | | |||| | || || || || || | ||||| | | Sbjct 6982477 ACATATCATACTTATAGCTTAAGGGCAGTGAGCCTGGGACTCCGGGGATCCTCTGAATGG 6982536 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||||||||| || Sbjct 6982537 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTGGTCCACTCCATGAACTCGTGGA 6982596 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 6982597 TTTTTTCATTCTCCAGCACATACCCCACATACTTCCTACTGACTACAAAATAAGCACTGC 6982656 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||||||| |||||| || ||||| | | Sbjct 6982657 CTGAAAACAGAGGTGTTTCCAAAGGAGGGGGCATTTTGTCAGTCCCTGTGTTCGTCAGCT 6982716 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | | ||| | | ||| |||| || | | ||| ||| | | || Sbjct 6982717 TTCCATTAATGACTTCATAATGCTTTTTCCATCTTTCTTTTTTATTGGCTGGCATTCTTT 6982776 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 |||| || || |||| |||| || | ||| |||| | || || || | |||| Sbjct 6982777 CGGTTTCCAGGTTGTTTTCACCCATTAATGACTTGAGCTTCCTGACAATTTCCAAGTTGG 6982836 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || |||| |||||||| || | || ||||| | | | | | Sbjct 6982837 TTTTAATAGGAAAATCCATGCCACAGAGATTTATCAAGTACTTCCAGTCTGTGTTCATGC 6982896 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||| | | |||||| || |||||||| || || ||||| || || ||||| | Sbjct 6982897 TGTAAAGGTCCCGCATACAGTTGAGGTCGGCCTGAACACGGCTCCAGGATGCATACACCA 6982956 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | |||| | |||| | |||||||||| |||||| || || || || |||||| Sbjct 6982957 CATTCTCTGATTGGCTGGCCAGAAAGACATTGCTGAAACAGGACACAATGCCAGTCACGG 6983016 Query 162839 CCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGG 162898 || | || || | ||| | || ||||| | ||| || | ||||||||| Sbjct 6983017 AAAGCAAAAAAGAATTCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCC 6983076 Query 162899 CGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAAT 162958 |||||||| || || | || || ||||| || ||||| || || || || || |||| Sbjct 6983077 TATAGATGGCTCTTAGCAGCCTGTCAAACATTTCAATCTTGTGATGAACTACTATGGAAT 6983136 Query 162959 ACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCC 163018 | ||||| || |||||||||| || || |||| || || ||| ||||| | | Sbjct 6983137 ATGCTATTGGATACTCAGCCTCTTCTTTGCTAAGAGGTTCTACAATGTATTTGCGATTCT 6983196 Query 163019 TCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | ||| | | |||||| |||||||| Sbjct 6983197 TGATAAAAGATGGACAGTCTCTGGTCATGTT 6983227 >seq940 Length=757995 Score = 107 bits (118), Expect = 2e-18 Identities = 494/772 (64%), Gaps = 15/772 (2%) Strand=Plus/Minus Query 176884 TTTTCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCG 176943 || ||||| ||||||| |||||| | | |||| | || | | || || | | Sbjct 715630 TTCTCCAGCTAAAGTAACTAAGATACAACTTATTGTTTCTGTCCACCTCCTTCAGATACC 715571 Query 176944 AGGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGT 177003 ||| || || | ||||| | ||||| | |||||||||||| | ||| | |||| | Sbjct 715570 TGGCTAGCTCGCTGGGGGAGTTATAGTCTTCCACGTGAATGAACGAATCTGCTGGGATAT 715511 Query 177004 AATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAG 177063 | || || || || || || || | ||| || || | || || || || |||| || | Sbjct 715510 AGTTCTCATAGTTTTCCCTGGACGGTCCTAGAACAACAGGGACGGCGCCGGCCAGCAGCG 715451 Query 177064 ATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 ||| || ||||| ||||| || || |||| | |||||| ||||| | ||||| | Sbjct 715450 CATTGTAAAGCTTTTCCGTAATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAA 715391 Query 177124 ATTTACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 |||| || | ||||| ||| || || | || | || | ||| || || | | Sbjct 715390 ATTTGCAAGTAGATATGGTA--GGAATCAGGTTTTTGTCATTCAGATACTCCCCAAACGC 715333 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCA 177240 | |||| | || || || ||| || || ||||| ||| || || || | Sbjct 715332 TTGCCCGAAGGTGTGGATCTCAATGCTCTTGCTCAGCTCGTTGTAATA-CTTGACCCGGG 715274 Query 177241 CGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACG 177299 |||| ||| |||||| || || || |||||||| || | ||| |||||||| || || Sbjct 715273 CGTGTTCGGGGTTCCAGTTACTCACAACCCAGCACACCAGCTT-CTCTTTGCTCGGCAC- 715216 Query 177300 GGATTCG-ATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATC 177358 |||| | || || | || || | | || | || || ||||| |||||||| Sbjct 715215 ---TTCGAACACGAAGGAGTTGGTGCTCACGGACAGGAAGCCGTAAGGCACTTGAATATC 715159 Query 177359 CGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGG 177418 ||||| || | ||| || | || | ||||| |||| || || || || ||| Sbjct 715158 AGAGTCTCGGCGGTAAGTCAGAGTTAAGTTGAACAGGTGCTCGATGCCGCTCTTCTGGGG 715099 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | | || || || | |||||||| ||||| || || |||| || || | | Sbjct 715098 AGTGTGAGTCGGTGACTCCAGATTCATCCAGATCCATTTCTGGAAGGGCGGCCTAGCCTG 715039 Query 177479 CGTAGGTAGAGT-ATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGG 177537 || ||| || | | ||| || || || || | |||||| | || || || | || Sbjct 715038 CGGAGGCAGGTTGGTCAGG-TCCCAGCTGATGTCCCGGTGGTGGATGAGAACCGCGTGGG 714980 Query 177538 CTTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGC 177597 |||| || | || | ||| ||| | ||||||| | || ||||| || ||| Sbjct 714979 ACTTGTTGTACAGGGAGCGGTCGGTGGTGAGGTGACACCCGCGGATGTTGAACATGGCTT 714920 Query 177598 TACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGAGGAGTAT 177649 || | | || ||||| | || ||| | |||||| ||||| ||| || Sbjct 714919 GGCAGGAGGTGAGGTCAAAGGTCTGTCCGAACGGCCACACCCAGATGAGAAT 714868 >seq52 Length=6537636 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 || ||||| ||||| || || ||||| | || |||| ||||| ||||||||||| || Sbjct 4971672 TTCCCCACCTGACTCTTTGGGTCTTTGAAATGGAGAACACTAGTGACAGATGTAGTTCCA 4971731 Query 171623 TTACGAT-GTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || ||| |||| | | ||| |||||| || || | || ||||| | ||| ||||| || Sbjct 4971732 TTGGGATGGTAG-ATGATTTCAGTACTGTTCTCAAAGCCTGATCCAGAAACATTCCATAA 4971790 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || | ||||||||| | ||| | ||||| ||||| | |||| |||||| || | Sbjct 4971791 AATCATAGGAGCTGGGCGTGCATTGGCAGAACAAGTAACATTTAGGTGATCTTCAAAAAG 4971850 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 4971851 TTTATAGTG 4971859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578390041988800