Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24 122 8e-23 seq339 95.1 1e-14 >seq24 Length=8999101 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| | |||||| | ||| | | ||||| ||||||||||||||||| || || Sbjct 2890505 ACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGT 2890564 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | || |||||| ||||| || || | | | || ||||| || || || ||||| ||||| Sbjct 2890565 ATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCC 2890624 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| || || ||||| | || | |||||| | ||||| || |||| Sbjct 2890625 TTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAG 2890684 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || ||||| || || || | |||||||||||| Sbjct 2890685 CGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq339 Length=2552696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || | ||| | |||||| ||||||||||| ||| ||||| || ||||| | Sbjct 2045393 TGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 2045334 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| ||||||||||| | |||||| |||||||||| || ||| ||||| Sbjct 2045333 TGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTGCCCGTCTC 2045282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576627815080