Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1371 104 7e-19
seq740 104 7e-19
seq255 104 7e-19
seq104 100 9e-18
seq39 100 9e-18
seq747 98.7 3e-17
seq318 98.7 3e-17
seq392 82.4 2e-12
>seq1371
Length=208385
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 122228 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 122169
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 122168 CCGGGTTTCGGC 122157
>seq740
Length=1116153
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 805238 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 805297
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 805298 CCGGGTTTCGGC 805309
>seq255
Length=3259565
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 566106 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 566047
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 566046 CCGGGTTTCGGC 566035
>seq104
Length=4853444
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 3409309 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 3409250
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 3409249 CCCGGGTTTCGGC 3409237
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3399874 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3399815
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3399814 CCGGGTTTCGGC 3399803
>seq39
Length=7040410
Score = 100 bits (110), Expect = 9e-18
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 3807941 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 3808000
Query 2829 CCGGGCTT 2836
| ||| ||
Sbjct 3808001 CTGGGTTT 3808008
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3810951 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3811010
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3811011 CCGGGTTTCGGC 3811022
>seq747
Length=1072060
Score = 98.7 bits (108), Expect = 3e-17
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259405 CTGAAATAGCTCAGTTAGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 259463
>seq318
Length=2555784
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1344993 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1345052
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1345053 CCGGGTTTCGGC 1345064
>seq392
Length=2303921
Score = 82.4 bits (90), Expect = 2e-12
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
|||| ||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 135828 TGAAATAGCTCAGTTGGGGGAGCATTAGACTGAAGATCTAAAGGGCCCTGGTT 135880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15848594020935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |