Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq52 226 3e-54
seq70 206 3e-48
seq110 176 5e-39
seq195 154 2e-32
seq528 140 4e-28
>seq52
Length=6537636
Score = 226 bits (250), Expect = 3e-54
Identities = 238/313 (76%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||| ||||||| |||| | |||| ||||||||||| || ||||| ||| | ||
Sbjct 4975524 GTGATGACCCAAGATGTAGGAGTGCAACTGAACACGCCTGCTTCCCTACGGTGCACTCTA 4975465
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | ||| ||||| || |||||||| || ||||||||||| |||| | ||||||
Sbjct 4975464 CAAAGTTCCCAGGAAGTACTGATTGTGACATGGCAGAAAATTAAGCAGGGAAGTCCAGAA 4975405
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || | ||||| |||| ||||| ||| | ||||| |||||||||| ||
Sbjct 4975404 AACATGGTCACCTACAGCAAGAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAA 4975345
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|||| ||||||||||| | |||| |||||||||||| || || |||||||||||| |
Sbjct 4975344 GTAAATATCACCCAGCTGGAACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTG 4975285
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| || || || || || || |||| || |||||||| |||||||| ||||| ||
Sbjct 4975284 GAGGATGATGGATGTTATAATTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 4975225
Query 171372 GTGGCCTGCCTCA 171384
| |||||||||
Sbjct 4975224 ATCACCTGCCTCA 4975212
Score = 179 bits (198), Expect = 4e-40
Identities = 206/277 (74%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| |||||||| | ||||| || |||||| ||||||| || ||||| || | || |||
Sbjct 4971880 GTACAGCCCACAGGATTTCTTCACTATAAACTTTTTGAAGATCACCTAAATGTTACTTGT 4971821
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||||||| ||||| | ||| |||||| ||||| |||| || |||| ||||
Sbjct 4971820 TCTGCCAATGCACGCCCAGCTCCTATGATTTTATGGAATGTTTCTGGATCAGGCTTTGAG 4971761
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| || | | | |||| | ||||||||||| ||||| || ||||| |||||
Sbjct 4971760 AACAGTACTGAAATCATCTACCATCCCAATGGAACTACATCTGTCACTAGTGTTCTCCAT 4971701
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
| |||||||| ||||||||| |||| ||| || | |||||| ||| ||||||||
Sbjct 4971700 TTCAAAGACCCAAAGAGTCAGGTGGGGAAGCAGTTGATCTGCTTGGTGAAGCACCTGGAG 4971641
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
||||| | ||| | |||||| || ||| ||||
Sbjct 4971640 AATGTGAAAGTCTTTAAGGAAACAGTGCACAAAGGTA 4971604
>seq70
Length=5737579
Score = 206 bits (228), Expect = 3e-48
Identities = 176/216 (81%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 178332 ATTAAGGAGCATGTAAACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGG 178391
|| ||||||||||| ||||| ||||||||||| || |||||||| || ||||||||||
Sbjct 5258847 ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGA 5258788
Query 178392 CGATGTCATAGATTTTTGCCTTGTGAAAACAAAAGTAAGGCTGTAGAACAAGTAAAGAGC 178451
| |||||| |||| ||||| |||||||| ||||| ||||| || || | || |||
Sbjct 5258787 TGCTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGAT 5258728
Query 178452 GCTTTTAGTAAGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTT 178511
|| ||||||||||| ||||| || || ||||||||||| ||||||||| |||| || |||
Sbjct 5258727 GCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAG-TTGACATCTTT 5258669
Query 178512 ATTAACTACATAGAAGCTTACATGACAACAAAAATG 178547
|| |||||||||||| | |||||||||| || |||
Sbjct 5258668 ATCAACTACATAGAAACCTACATGACAATGAAGATG 5258633
>seq110
Length=4795302
Score = 176 bits (194), Expect = 5e-39
Identities = 145/177 (82%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | |||||| | ||||||||||||||| | ||||||||| ||||||||
Sbjct 96661 CTTCAGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAA 96602
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| || |||||||||||||| || ||||||||||||| |||||| || ||||| ||||
Sbjct 96601 AGGCACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTT 96542
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158
|||| || |||||||| ||| ||||||||| ||||| |||||| ||||| ||
Sbjct 96541 CACCACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATGAGAGGCAGATC 96485
Score = 102 bits (112), Expect = 1e-16
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341
||||||||||||||||||||| |||||||| || || |||| ||| || || ||||
Sbjct 92545 GGCCCCAAAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCTCTCTGGC 92486
Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401
||||| || | | | || || | ||||||| ||| |||||||| | ||| ||
Sbjct 92485 GGAGAATCCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTCTCACGCC 92426
Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442
||||| || |||||||||| || ||||| ||| ||| ||
Sbjct 92425 CTTGGAAGACAGCTCCTTAGCGTTGGTGGATCCCTGGAAGA 92385
>seq195
Length=3676426
Score = 154 bits (170), Expect = 2e-32
Identities = 133/167 (80%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||| ||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| | || ||||| || ||||| ||||| ||||||||||| ||||
Sbjct 364828 TGCCACGAGCTGAGAACCA------------TGGCCCAGACATCAAGGAGCATGTGAACT 364875
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
||||||||||||| || |||||||| || |||||||||| || |||
Sbjct 364876 CTCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGACGCTGT 364922
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || ||||||||||| |||||||||||||| || ||||| |||||||
Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552
Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547
||||| | |||||||||| || |||
Sbjct 367553 TAGAAACCTACATGACAATGAAGATG 367578
>seq528
Length=1711785
Score = 140 bits (154), Expect = 4e-28
Identities = 545/844 (65%), Gaps = 61/844 (7%)
Strand=Plus/Minus
Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670
||||| ||||| || |||| || | ||||||| | ||| | | |||| | |
Sbjct 409777 TACTCCCTGGTCTTCGGACTTGGTCTTCTGGGCAATGTGGTTGTGGTGGTGATCCTTACA 409718
Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730
|| |||| ||||||| | |||||||||||||||| |||| ||||| ||||| || ||||
Sbjct 409717 AAATACAGGAGGCTCGGCATCATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGAC 409658
Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGG 8790
|||| | | |||| || || || |||||||||| || || |||| | |
Sbjct 409657 TTGCTCTTCCTCATCACACTACCATTCTGGATTCACT--ATGTCAGGTGGAA----GGAG 409604
Query 8791 TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTAC 8850
|||| | |||| ||||| ||||| | ||||||| | || ||| |||||
Sbjct 409603 TGGGTATTTGGCCACTGTATGTGCAAGTTCGTCTCAGGCCTTTACTACATGGGCTTGTAC 409544
Query 8851 AGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCG 8910
|| || || | || ||||||||| |||| |||||||||| || || | || | ||
Sbjct 409543 AGTGAGATCTTCTTCATCATCCTGCTGACCGTGGACAGGTACCTGGCCATCGTCCATGCC 409484
Query 8911 GTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGG 8970
||| | || | ||| || | | |||||| || |||| | |||||
Sbjct 409483 GTGTTCGCCCTGCGGACCCGGACCGTCACTTTCGGCATCATCAGCAGCGCGTTCACCTGG 409424
Query 8971 ATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATG-CCA- 9028
| ||||| ||| | | | | || || ||||| || ||| || | |||
Sbjct 409423 CTCCTGGCCGTGCTAGTGGCTCTCCCTGATTTTAT---------ATTCAACAAGGTCCAG 409373
Query 9029 ---CAGGCAAGGGGGTCTGCC--AAGCCTC--CTACAC------------AGACTTTTGG 9069
|| | ||| ||| || |||| | |||| | |||| |||
Sbjct 409372 GAGGAGTCTGGGGAGTCCACCTGCAGCCCCCACTACCCACTGGATGAAGAAGACACCTGG 409313
Query 9070 AAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATG 9129
||| | | ||| | || |||| ||| || ||| | |||||| |||| |||||
Sbjct 409312 AAGCGCATACATGCTCTGAGAATGAACATCCTCGGCCTTGTGCTGCCTCTGCTGCTCATG 409253
Query 9130 GCCTTCTGCT--ACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAA 9187
| |||||| ||||| ||||||||| ||| || | | || |||| | ||
Sbjct 409252 GTGGTCTGCTACACTGG--CATCATCAAGACCCTGCTGAGGTGCCCCAAC----CACAAA 409199
Query 9188 ACCTGC-ACGCCGTCAAGCTCAT-TTTG--ATCATGGTGGTGCTTTATTTTGTCTTTTGG 9243
| | | | ||| || |||||| |||| ||||||||||| ||| ||| | || |||
Sbjct 409198 AAGTACAAGGCCATCCGGCTCATCTTTGTCATCATGGTGGT-CTT--CTTTATTTTCTGG 409142
Query 9244 ATCCCCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG--GGCCAG 9301
| ||| |||||| | | ||| | || ||||||||| || | | || | ||| |
Sbjct 409141 ACCCCTTACAACCTGGTCCTCCTGTTCTCTGCCTACCAAGTGGTCTTCTTCGAAGGC--G 409084
Query 9302 ACTGTGAAGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCT 9358
|||| || |||| || | ||||| ||||| | ||||| | || |||||||||
Sbjct 409083 ACTGCGA---GCGGAACAAACAGCTGGACCTGGCCATGCTGGTGACGCAGGTGATCGCCT 409027
Query 9359 GCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGA 9418
|| ||||||||||||||||| ||||||||||| || |||||||| ||||| ||
Sbjct 409026 ACATGCACTGCTGCGTCAACCCAGTCATCTACGCCTTCGTGGGCGAGCGCTTCCAGAAGT 408967
Query 9419 ACCT 9422
||||
Sbjct 408966 ACCT 408963
Score = 120 bits (132), Expect = 4e-22
Identities = 212/305 (70%), Gaps = 8/305 (3%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || ||||| || | | || || | ||||| ||| ||| |||| ||||||||
Sbjct 465952 GTATTCACTGGTATTCATCATCGGCCTGGTGGGCAACATCCTCGTGGTCCTGGTCCTCAT 466011
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| |||||||||||| | |||||||| ||||| ||| ||||||||||| | ||
Sbjct 466012 GCAGAACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCGTGTCAGA 466071
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788
|||||| | | ||||| || ||||| ||||| ||| | | || || |||||| |
Sbjct 466072 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACAACCTGAAGGATAACTGG-G 466130
Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848
|| | | || ||||| || ||||| | |||||| | | || ||| |||
Sbjct 466131 CGTTCGGCAACG-CCACC-----TGCAAGTTCCTCTCGGGCCTCTACTACATGGGCTTGT 466184
Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908
||||||| || | || ||||||||| |||| |||||||||| || || | || |||
Sbjct 466185 ACAGCGAGATCTTCTTCATCATCCTGCTGACCGTGGACAGGTACCTGGCCATCGTCCACG 466244
Query 8909 CGGTG 8913
| |||
Sbjct 466245 CCGTG 466249
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/222 (70%), Gaps = 10/222 (5%)
Strand=Plus/Minus
Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255
||||| | |||||| || | ||| || | | || ||| |||| |||| ||||||||||
Sbjct 304493 GCCGTGAGGCTCATCTTCACCATCATGATCGTGTACTTTCTCTTCTGGACCCCCTACAAC 304434
Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGC----CAGACTGTGAAGC 9311
|| | || | | ||||| ||| |||||| ||||||| || ||||||| |
Sbjct 304433 ATCGTCCTTCTGCTCAGCACCTTCCAGGAGGCC---TTTGGGCTGAACA-ACTGTGA-GA 304379
Query 9312 GCGGC-GCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCT 9370
|| || || | ||||| |||| | |||| | |||| | | || |||||||
Sbjct 304378 GCAGCAGCCGCCTGGACCGGGCCATGCAGGTGACCGAGACCCTGGGGATGACTCACTGCT 304319
Query 9371 GCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|| ||||||||||||||||||| || ||||| || || ||||
Sbjct 304318 GCATCAACCCCGTCATCTACGCCTTCGTGGGGGAGAAATTCC 304277
Score = 86.0 bits (94), Expect = 7e-12
Identities = 155/222 (70%), Gaps = 10/222 (5%)
Strand=Plus/Minus
Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255
||||| | |||||| || | ||| || | | || ||| |||| |||| |||||||||
Sbjct 287199 GCCGTGAGGCTCATCTTCACCATCATGATCGTGTACTTTCTCTTCTGGACTCCCTACAAC 287140
Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGC----CAGACTGTGAAGC 9311
|| | ||| | | ||||| ||| |||||| || |||| || ||||||| |
Sbjct 287139 ATCGTCCTCCTGCTCAGCACCTTCCAGGAGGCC---TTAGGGCTGAACA-ACTGTGA-GA 287085
Query 9312 GCGGCG-CAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCT 9370
|| | |||| ||||| |||| | |||| | |||| | | || ||||| |
Sbjct 287084 GCTCCAACAGGCTGGACCAGGCCATGCAGGTGACCGAGACCCTGGGGATGACTCACTGTT 287025
Query 9371 GCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|| ||||||||||||||||||| || ||||| || |||||||
Sbjct 287024 GCATCAACCCCGTCATCTACGCCTTCGTGGGGGAGAAGTTCC 286983
Score = 86.0 bits (94), Expect = 7e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670
||||| |||||||| | || || | | ||||| |||||| | || ||| |
Sbjct 287787 TACTCGCTGGTGTTCATCTTCGGCTTCGTGGGCAACCTGCTGGTGGTGCTCACGCTCGTC 287728
Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730
|| | ||||| |||||||| |||||| |||||| |||| ||||||||||||| |||
Sbjct 287727 AACTGCAAGAAGCTCAGGAGCATGACTGACATCTACCTGCTCAACCTGGCCCTGTCAGAC 287668
Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||||| | | ||||| ||||||| ||| |||||
Sbjct 287667 CTGCTCTTCCTGCTCACCATCCCCTTCTGGGCTCACT 287631
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| |||| | ||| | ||| ||||||||| ||| ||||||||||||||||||
Sbjct 466668 TGGACCTGGCTATTCAGGTCACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCA 466727
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|| |||||| ||||||||||| | |||||
Sbjct 466728 TCGTCTACGTCTTTGTGGGCGAGAGGTTCC 466757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583445675239200
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