Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq52 226 3e-54 seq70 206 3e-48 seq110 176 5e-39 seq195 154 2e-32 seq528 140 4e-28 >seq52 Length=6537636 Score = 226 bits (250), Expect = 3e-54 Identities = 238/313 (76%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| ||||||| |||| | |||| ||||||||||| || ||||| ||| | || Sbjct 4975524 GTGATGACCCAAGATGTAGGAGTGCAACTGAACACGCCTGCTTCCCTACGGTGCACTCTA 4975465 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| ||||| || |||||||| || ||||||||||| |||| | |||||| Sbjct 4975464 CAAAGTTCCCAGGAAGTACTGATTGTGACATGGCAGAAAATTAAGCAGGGAAGTCCAGAA 4975405 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | ||||| |||| ||||| ||| | ||||| |||||||||| || Sbjct 4975404 AACATGGTCACCTACAGCAAGAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAA 4975345 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||| ||||||||||| | |||| |||||||||||| || || |||||||||||| | Sbjct 4975344 GTAAATATCACCCAGCTGGAACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTG 4975285 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || || || || || || |||| || |||||||| |||||||| ||||| || Sbjct 4975284 GAGGATGATGGATGTTATAATTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 4975225 Query 171372 GTGGCCTGCCTCA 171384 | ||||||||| Sbjct 4975224 ATCACCTGCCTCA 4975212 Score = 179 bits (198), Expect = 4e-40 Identities = 206/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| | ||||| || |||||| ||||||| || ||||| || | || ||| Sbjct 4971880 GTACAGCCCACAGGATTTCTTCACTATAAACTTTTTGAAGATCACCTAAATGTTACTTGT 4971821 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| |||||| ||||| |||| || |||| |||| Sbjct 4971820 TCTGCCAATGCACGCCCAGCTCCTATGATTTTATGGAATGTTTCTGGATCAGGCTTTGAG 4971761 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| || | | | |||| | ||||||||||| ||||| || ||||| ||||| Sbjct 4971760 AACAGTACTGAAATCATCTACCATCCCAATGGAACTACATCTGTCACTAGTGTTCTCCAT 4971701 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||| ||||||||| |||| ||| || | |||||| ||| |||||||| Sbjct 4971700 TTCAAAGACCCAAAGAGTCAGGTGGGGAAGCAGTTGATCTGCTTGGTGAAGCACCTGGAG 4971641 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 ||||| | ||| | |||||| || ||| |||| Sbjct 4971640 AATGTGAAAGTCTTTAAGGAAACAGTGCACAAAGGTA 4971604 >seq70 Length=5737579 Score = 206 bits (228), Expect = 3e-48 Identities = 176/216 (81%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 178332 ATTAAGGAGCATGTAAACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGG 178391 || ||||||||||| ||||| ||||||||||| || |||||||| || |||||||||| Sbjct 5258847 ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGA 5258788 Query 178392 CGATGTCATAGATTTTTGCCTTGTGAAAACAAAAGTAAGGCTGTAGAACAAGTAAAGAGC 178451 | |||||| |||| ||||| |||||||| ||||| ||||| || || | || ||| Sbjct 5258787 TGCTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGAT 5258728 Query 178452 GCTTTTAGTAAGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTT 178511 || ||||||||||| ||||| || || ||||||||||| ||||||||| |||| || ||| Sbjct 5258727 GCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAG-TTGACATCTTT 5258669 Query 178512 ATTAACTACATAGAAGCTTACATGACAACAAAAATG 178547 || |||||||||||| | |||||||||| || ||| Sbjct 5258668 ATCAACTACATAGAAACCTACATGACAATGAAGATG 5258633 >seq110 Length=4795302 Score = 176 bits (194), Expect = 5e-39 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | |||||| | ||||||||||||||| | ||||||||| |||||||| Sbjct 96661 CTTCAGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAA 96602 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| || ||||||||||||| |||||| || ||||| |||| Sbjct 96601 AGGCACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTT 96542 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||| || |||||||| ||| ||||||||| ||||| |||||| ||||| || Sbjct 96541 CACCACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATGAGAGGCAGATC 96485 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||||||||||||||| |||||||| || || |||| ||| || || |||| Sbjct 92545 GGCCCCAAAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCTCTCTGGC 92486 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| || | | | || || | ||||||| ||| |||||||| | ||| || Sbjct 92485 GGAGAATCCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTCTCACGCC 92426 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||| || |||||||||| || ||||| ||| ||| || Sbjct 92425 CTTGGAAGACAGCTCCTTAGCGTTGGTGGATCCCTGGAAGA 92385 >seq195 Length=3676426 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| || |||||||||||||| ||||||||| |||||||||||| Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| | || ||||| || ||||| ||||| ||||||||||| |||| Sbjct 364828 TGCCACGAGCTGAGAACCA------------TGGCCCAGACATCAAGGAGCATGTGAACT 364875 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 ||||||||||||| || |||||||| || |||||||||| || ||| Sbjct 364876 CTCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGACGCTGT 364922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || ||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | |||||||||| || ||| Sbjct 367553 TAGAAACCTACATGACAATGAAGATG 367578 >seq528 Length=1711785 Score = 140 bits (154), Expect = 4e-28 Identities = 545/844 (65%), Gaps = 61/844 (7%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| ||||| || |||| || | ||||||| | ||| | | |||| | | Sbjct 409777 TACTCCCTGGTCTTCGGACTTGGTCTTCTGGGCAATGTGGTTGTGGTGGTGATCCTTACA 409718 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || |||| ||||||| | |||||||||||||||| |||| ||||| ||||| || |||| Sbjct 409717 AAATACAGGAGGCTCGGCATCATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGAC 409658 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGG 8790 |||| | | |||| || || || |||||||||| || || |||| | | Sbjct 409657 TTGCTCTTCCTCATCACACTACCATTCTGGATTCACT--ATGTCAGGTGGAA----GGAG 409604 Query 8791 TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTAC 8850 |||| | |||| ||||| ||||| | ||||||| | || ||| ||||| Sbjct 409603 TGGGTATTTGGCCACTGTATGTGCAAGTTCGTCTCAGGCCTTTACTACATGGGCTTGTAC 409544 Query 8851 AGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCG 8910 || || || | || ||||||||| |||| |||||||||| || || | || | || Sbjct 409543 AGTGAGATCTTCTTCATCATCCTGCTGACCGTGGACAGGTACCTGGCCATCGTCCATGCC 409484 Query 8911 GTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGG 8970 ||| | || | ||| || | | |||||| || |||| | ||||| Sbjct 409483 GTGTTCGCCCTGCGGACCCGGACCGTCACTTTCGGCATCATCAGCAGCGCGTTCACCTGG 409424 Query 8971 ATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATG-CCA- 9028 | ||||| ||| | | | | || || ||||| || ||| || | ||| Sbjct 409423 CTCCTGGCCGTGCTAGTGGCTCTCCCTGATTTTAT---------ATTCAACAAGGTCCAG 409373 Query 9029 ---CAGGCAAGGGGGTCTGCC--AAGCCTC--CTACAC------------AGACTTTTGG 9069 || | ||| ||| || |||| | |||| | |||| ||| Sbjct 409372 GAGGAGTCTGGGGAGTCCACCTGCAGCCCCCACTACCCACTGGATGAAGAAGACACCTGG 409313 Query 9070 AAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATG 9129 ||| | | ||| | || |||| ||| || ||| | |||||| |||| ||||| Sbjct 409312 AAGCGCATACATGCTCTGAGAATGAACATCCTCGGCCTTGTGCTGCCTCTGCTGCTCATG 409253 Query 9130 GCCTTCTGCT--ACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAA 9187 | |||||| ||||| ||||||||| ||| || | | || |||| | || Sbjct 409252 GTGGTCTGCTACACTGG--CATCATCAAGACCCTGCTGAGGTGCCCCAAC----CACAAA 409199 Query 9188 ACCTGC-ACGCCGTCAAGCTCAT-TTTG--ATCATGGTGGTGCTTTATTTTGTCTTTTGG 9243 | | | | ||| || |||||| |||| ||||||||||| ||| ||| | || ||| Sbjct 409198 AAGTACAAGGCCATCCGGCTCATCTTTGTCATCATGGTGGT-CTT--CTTTATTTTCTGG 409142 Query 9244 ATCCCCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG--GGCCAG 9301 | ||| |||||| | | ||| | || ||||||||| || | | || | ||| | Sbjct 409141 ACCCCTTACAACCTGGTCCTCCTGTTCTCTGCCTACCAAGTGGTCTTCTTCGAAGGC--G 409084 Query 9302 ACTGTGAAGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCT 9358 |||| || |||| || | ||||| ||||| | ||||| | || ||||||||| Sbjct 409083 ACTGCGA---GCGGAACAAACAGCTGGACCTGGCCATGCTGGTGACGCAGGTGATCGCCT 409027 Query 9359 GCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGA 9418 || ||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct 409026 ACATGCACTGCTGCGTCAACCCAGTCATCTACGCCTTCGTGGGCGAGCGCTTCCAGAAGT 408967 Query 9419 ACCT 9422 |||| Sbjct 408966 ACCT 408963 Score = 120 bits (132), Expect = 4e-22 Identities = 212/305 (70%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || ||||| || | | || || | ||||| ||| ||| |||| |||||||| Sbjct 465952 GTATTCACTGGTATTCATCATCGGCCTGGTGGGCAACATCCTCGTGGTCCTGGTCCTCAT 466011 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||| | |||||||| ||||| ||| ||||||||||| | || Sbjct 466012 GCAGAACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCGTGTCAGA 466071 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| || ||||| ||||| ||| | | || || |||||| | Sbjct 466072 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACAACCTGAAGGATAACTGG-G 466130 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 || | | || ||||| || ||||| | |||||| | | || ||| ||| Sbjct 466131 CGTTCGGCAACG-CCACC-----TGCAAGTTCCTCTCGGGCCTCTACTACATGGGCTTGT 466184 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 ||||||| || | || ||||||||| |||| |||||||||| || || | || ||| Sbjct 466185 ACAGCGAGATCTTCTTCATCATCCTGCTGACCGTGGACAGGTACCTGGCCATCGTCCACG 466244 Query 8909 CGGTG 8913 | ||| Sbjct 466245 CCGTG 466249 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||||| | |||||| || | ||| || | | || ||| |||| |||| |||||||||| Sbjct 304493 GCCGTGAGGCTCATCTTCACCATCATGATCGTGTACTTTCTCTTCTGGACCCCCTACAAC 304434 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGC----CAGACTGTGAAGC 9311 || | || | | ||||| ||| |||||| ||||||| || ||||||| | Sbjct 304433 ATCGTCCTTCTGCTCAGCACCTTCCAGGAGGCC---TTTGGGCTGAACA-ACTGTGA-GA 304379 Query 9312 GCGGC-GCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCT 9370 || || || | ||||| |||| | |||| | |||| | | || ||||||| Sbjct 304378 GCAGCAGCCGCCTGGACCGGGCCATGCAGGTGACCGAGACCCTGGGGATGACTCACTGCT 304319 Query 9371 GCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || ||||||||||||||||||| || ||||| || || |||| Sbjct 304318 GCATCAACCCCGTCATCTACGCCTTCGTGGGGGAGAAATTCC 304277 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||||| | |||||| || | ||| || | | || ||| |||| |||| ||||||||| Sbjct 287199 GCCGTGAGGCTCATCTTCACCATCATGATCGTGTACTTTCTCTTCTGGACTCCCTACAAC 287140 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGC----CAGACTGTGAAGC 9311 || | ||| | | ||||| ||| |||||| || |||| || ||||||| | Sbjct 287139 ATCGTCCTCCTGCTCAGCACCTTCCAGGAGGCC---TTAGGGCTGAACA-ACTGTGA-GA 287085 Query 9312 GCGGCG-CAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCT 9370 || | |||| ||||| |||| | |||| | |||| | | || ||||| | Sbjct 287084 GCTCCAACAGGCTGGACCAGGCCATGCAGGTGACCGAGACCCTGGGGATGACTCACTGTT 287025 Query 9371 GCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || ||||||||||||||||||| || ||||| || ||||||| Sbjct 287024 GCATCAACCCCGTCATCTACGCCTTCGTGGGGGAGAAGTTCC 286983 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || || | | ||||| |||||| | || ||| | Sbjct 287787 TACTCGCTGGTGTTCATCTTCGGCTTCGTGGGCAACCTGCTGGTGGTGCTCACGCTCGTC 287728 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| |||||||| |||||| |||||| |||| ||||||||||||| ||| Sbjct 287727 AACTGCAAGAAGCTCAGGAGCATGACTGACATCTACCTGCTCAACCTGGCCCTGTCAGAC 287668 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | | ||||| ||||||| ||| ||||| Sbjct 287667 CTGCTCTTCCTGCTCACCATCCCCTTCTGGGCTCACT 287631 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| |||| | ||| | ||| ||||||||| ||| |||||||||||||||||| Sbjct 466668 TGGACCTGGCTATTCAGGTCACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCA 466727 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || |||||| ||||||||||| | ||||| Sbjct 466728 TCGTCTACGTCTTTGTGGGCGAGAGGTTCC 466757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583445675239200