Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq24 104 2e-17
seq412 87.8 2e-12
seq646 82.4 7e-11
>seq24
Length=8999101
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | ||||| || | ||| | || |||||||||||||||||| || | |
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| || |||||||| | ||||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || || || ||| |||||| |||| | | | | || || | || |||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | |||||| || || || || | || ||||| || ||||||||
Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq412
Length=2039319
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | || || | | || ||||||||||| || |||||
Sbjct 1106597 CTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAA 1106656
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||| | || | || |||| ||||| ||||||| ||| | | |
Sbjct 1106657 GATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATT 1106715
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||| | ||||| || ||||| ||| || ||||
Sbjct 1106716 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCAT 1106775
Query 35725 AAATATCTGCATT 35737
|| |||||||
Sbjct 1106776 GAACTGCTGCATT 1106788
>seq646
Length=1375836
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || ||| ||| |||| ||||||||||| ||||||||
Sbjct 361734 CCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCAAAG 361793
Query 35606 ATCAACCGCTGCTGGTC 35622
|||| ||||||||||||
Sbjct 361794 ATCAGCCGCTGCTGGTC 361810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450760900559240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |