Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 seq412 87.8 2e-12 seq646 82.4 7e-11 >seq24 Length=8999101 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| || | ||| | || |||||||||||||||||| || | | Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| || |||||||| | |||| Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || || ||| |||||| |||| | | | | || || | || ||| Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || || | || ||||| || |||||||| Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq412 Length=2039319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | || || | | || ||||||||||| || ||||| Sbjct 1106597 CTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAA 1106656 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||| ||||| ||||||| ||| | | | Sbjct 1106657 GATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGGATCTTTGCCTTGACATT 1106715 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || ||||| ||| || |||| Sbjct 1106716 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCAT 1106775 Query 35725 AAATATCTGCATT 35737 || ||||||| Sbjct 1106776 GAACTGCTGCATT 1106788 >seq646 Length=1375836 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| |||| ||||||||||| |||||||| Sbjct 361734 CCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCAAAG 361793 Query 35606 ATCAACCGCTGCTGGTC 35622 |||| |||||||||||| Sbjct 361794 ATCAGCCGCTGCTGGTC 361810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760900559240