Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq503 86.0 7e-12 seq5 86.0 7e-12 seq446 82.4 8e-11 seq30 82.4 8e-11 >seq503 Length=1718272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 789162 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 789221 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| ||||||| || ||| |||||||| || || ||||| |||| | Sbjct 789222 CCAATGGGCTGCAAAAGGTTCAAATTATTGCTACCCACAAAATTCTGTGCCAAATTGATA 789281 Query 117425 ATCGT 117429 || || Sbjct 789282 ATGGT 789286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 789162 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 789221 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| | || ||| ||||| |||||||| |||||||| | | Sbjct 789222 CCAATGGGCTGCAAAAGGTTCAAATTATTGCTACCCACAAAATTCTGTGCCAAATTGATA 789281 Query 152149 ATCGT 152153 || || Sbjct 789282 ATGGT 789286 >seq5 Length=13702985 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || || || |||||||| ||||| ||||||||||| Sbjct 6804062 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6804003 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| ||||||||||||||||||||| Sbjct 6804002 CCAATAGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAATTCTGAGCCAAATTCACA 6803943 Query 152149 ATCGT 152153 || || Sbjct 6803942 ATAGT 6803938 >seq446 Length=2046506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||||| ||||| | ||| |||||||| ||||| || ||||| Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| || |||||| |||||||| ||||| || |||||||| Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 492488 ACTACACGTT 492479 >seq30 Length=8517879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | ||||||||||| | ||| || ||||| ||||| || ||| Sbjct 2591640 CCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTC 2591581 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||| ||||| || |||||| Sbjct 2591580 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAG 2591521 Query 74889 GCGAC 74893 || || Sbjct 2591520 GCTAC 2591516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176306319400