Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq503 86.0 7e-12
seq5 86.0 7e-12
seq446 82.4 8e-11
seq30 82.4 8e-11
>seq503
Length=1718272
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 789162 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 789221
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||| ||||||| || ||| |||||||| || || ||||| |||| |
Sbjct 789222 CCAATGGGCTGCAAAAGGTTCAAATTATTGCTACCCACAAAATTCTGTGCCAAATTGATA 789281
Query 117425 ATCGT 117429
|| ||
Sbjct 789282 ATGGT 789286
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 789162 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 789221
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||| | || ||| ||||| |||||||| |||||||| | |
Sbjct 789222 CCAATGGGCTGCAAAAGGTTCAAATTATTGCTACCCACAAAATTCTGTGCCAAATTGATA 789281
Query 152149 ATCGT 152153
|| ||
Sbjct 789282 ATGGT 789286
>seq5
Length=13702985
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || || || |||||||| ||||| |||||||||||
Sbjct 6804062 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 6804003
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | ||||| ||||| |||||||||||||||||||||
Sbjct 6804002 CCAATAGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAATTCTGAGCCAAATTCACA 6803943
Query 152149 ATCGT 152153
|| ||
Sbjct 6803942 ATAGT 6803938
>seq446
Length=2046506
Score = 82.4 bits (90), Expect = 8e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | ||||| ||||| | ||| |||||||| ||||| || |||||
Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || |||| || |||||| |||||||| ||||| || ||||||||
Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489
Query 74892 ACAAGGCGTT 74901
|| | ||||
Sbjct 492488 ACTACACGTT 492479
>seq30
Length=8517879
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| ||||||||||| || | ||||||||||| | ||| || ||||| ||||| || |||
Sbjct 2591640 CCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTC 2591581
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| | ||| || |||| || |||||| |||||||| ||||| || ||||||
Sbjct 2591580 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAG 2591521
Query 74889 GCGAC 74893
|| ||
Sbjct 2591520 GCTAC 2591516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547176306319400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |