Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 149 7e-31 seq412 109 6e-19 seq39 102 9e-17 seq556 98.7 1e-15 seq729 91.5 2e-13 seq5 84.2 2e-11 seq580 82.4 9e-11 >seq24 Length=8999101 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || || ||||| ||| | Sbjct 2890726 ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCA 2890667 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| || || || ||||| || || || |||||||| |||||| Sbjct 2890666 GATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 2890607 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| || || |||| | ||| || | ||||| || Sbjct 2890606 CAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAAC 2890547 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | || || ||||| Sbjct 2890546 ATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500 >seq412 Length=2039319 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| || | || ||||| || || || ||||| ||| | |||| | ||| | ||| Sbjct 1106772 AAGACCCTGATTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAAT 1106713 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 | ||||| || || ||||||| |||||| || || |||||||||||| | || || ||| Sbjct 1106712 GTCAAGGCAAAGATCCAGGACA-GGAGGGCATACCCCCAGACCAGCAGAGGCTGATCTTT 1106654 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 ||||| ||||| || || |||| | || | | ||||| || |||| ||||| ||| Sbjct 1106653 GCTGGCAAGCAGCTGGAAGATGGATGCACTGTGTCTGACTACAAAATCCAGAAGGAGTCC 1106594 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || ||| || | || | ||||| Sbjct 1106593 ACCCTGTACCTGGTCCTGTGCCTGAGGGGTGG 1106562 >seq39 Length=7040410 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| || || || ||||| ||||| ||| | | Sbjct 3825809 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAAACCATCACTCTCGAGGTGGAGCCCAG 3825868 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| || || || ||||| Sbjct 3825869 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3825928 Query 27525 GCAGCGTCTAATTTTTGCTGG 27545 |||| | || || ||||| || Sbjct 3825929 GCAGAGGCTGATCTTTGCCGG 3825949 >seq556 Length=1594741 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 ||| |||| |||||||| ||| |||| ||| || |||| || || || ||||| Sbjct 329661 ATTTCTCTCGAGGTTGAATCATCAGATACCATAAAGAACGTGAAAGCCAAGATCCAGGAT 329602 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 || || || |||||||| || ||||| | |||||||||||| | || ||||| || ||| Sbjct 329601 AAAGAAGGTATTCCTCCTGATCAGCAAAGACTAATTTTTGCTAGCAAACAACTAGAAGAT 329542 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | ||||| | ||||| || | |||||||| |||| |||||||| || | | | Sbjct 329541 GGGCGTACTTT----GACTACAAAATTCAAAAGGAGTCCA--CTTCATCTTGTTTCGAGA 329488 Query 27622 CTTC 27625 |||| Sbjct 329487 CTTC 329484 >seq729 Length=1207513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG-AGTCAG 27463 |||||| ||||| | ||||| | ||| | ||||| ||||| | | || ||| || | Sbjct 71238 AATGCAGATCTTCTTAAAGACCATGACCAGTAAGACCATTAC-CATCAGATTGGAGCCCA 71296 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| | || || ||| | || || || || ||||||||||||| || || || ||| Sbjct 71297 GTGACACCACTGAGAATGTTAAAGCCAAGATCCAGGACAAGGAGGTTATCCCCCCTGACT 71356 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || | ||||| | ||||| || || ||||| | |||| | ||||| | Sbjct 71357 AGCAGAGACTGACCTTTGCCAGCAAGCACCTGGAAGATGAAC-ACCCCTGTCTGACTACA 71415 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| ||||| || || || || ||| || | ||||| Sbjct 71416 ACATCCAGAAGGAGTCCACCCTGCACCTGGTTCTGCACCTGAGGGGTGG 71464 >seq5 Length=13702985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| | || || ||||||||| | || || |||||||| ||||| Sbjct 9285004 ATCCAGGACAAGGAGGGCGTCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAG 9284945 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || ||| | |||||| | ||||| ||| ||| |||| ||||| || || || Sbjct 9284944 CTGGAAAATGGACATACCCTGTCTGACTACAATATCC---AGGAGTCCACCCTGCACCTG 9284888 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 | | |||| || | ||||| Sbjct 9284887 GCCCTGCGCCTGAGAGGTGG 9284868 >seq580 Length=1649027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||| ||||| ||||||||||| ||||| || || |||| ||| Sbjct 1583663 GGCATTCCTCCTGACCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGT 1583604 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGG 27595 || || | ||||| || ||||||||| Sbjct 1583603 ACTCTGTCGGACTACAACATCCAAAAGG 1583576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269031109360