Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq24 149 7e-31
seq412 109 6e-19
seq39 102 9e-17
seq556 98.7 1e-15
seq729 91.5 2e-13
seq5 84.2 2e-11
seq580 82.4 9e-11
>seq24
Length=8999101
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || ||||| || || || ||||| ||| |
Sbjct 2890726 ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCA 2890667
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| |||| || || || ||||| || || || |||||||| ||||||
Sbjct 2890666 GATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 2890607
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||||||||| ||||| || || |||| | ||| || | ||||| ||
Sbjct 2890606 CAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAAC 2890547
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | || || |||||
Sbjct 2890546 ATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500
>seq412
Length=2039319
Score = 109 bits (120), Expect = 6e-19
Identities = 152/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480
||||| || | || ||||| || || || ||||| ||| | |||| | ||| | |||
Sbjct 1106772 AAGACCCTGATTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAAT 1106713
Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540
| ||||| || || ||||||| |||||| || || |||||||||||| | || || |||
Sbjct 1106712 GTCAAGGCAAAGATCCAGGACA-GGAGGGCATACCCCCAGACCAGCAGAGGCTGATCTTT 1106654
Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600
||||| ||||| || || |||| | || | | ||||| || |||| ||||| |||
Sbjct 1106653 GCTGGCAAGCAGCTGGAAGATGGATGCACTGTGTCTGACTACAAAATCCAGAAGGAGTCC 1106594
Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || | || ||| || | || | |||||
Sbjct 1106593 ACCCTGTACCTGGTCCTGTGCCTGAGGGGTGG 1106562
>seq39
Length=7040410
Score = 102 bits (112), Expect = 9e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || ||||| || || || ||||| ||||| ||| | |
Sbjct 3825809 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAAACCATCACTCTCGAGGTGGAGCCCAG 3825868
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | || ||||||| || || |||||||||||||| || || || |||||
Sbjct 3825869 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3825928
Query 27525 GCAGCGTCTAATTTTTGCTGG 27545
|||| | || || ||||| ||
Sbjct 3825929 GCAGAGGCTGATCTTTGCCGG 3825949
>seq556
Length=1594741
Score = 98.7 bits (108), Expect = 1e-15
Identities = 133/184 (72%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
||| |||| |||||||| ||| |||| ||| || |||| || || || |||||
Sbjct 329661 ATTTCTCTCGAGGTTGAATCATCAGATACCATAAAGAACGTGAAAGCCAAGATCCAGGAT 329602
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
|| || || |||||||| || ||||| | |||||||||||| | || ||||| || |||
Sbjct 329601 AAAGAAGGTATTCCTCCTGATCAGCAAAGACTAATTTTTGCTAGCAAACAACTAGAAGAT 329542
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| ||||| | ||||| || | |||||||| |||| |||||||| || | | |
Sbjct 329541 GGGCGTACTTT----GACTACAAAATTCAAAAGGAGTCCA--CTTCATCTTGTTTCGAGA 329488
Query 27622 CTTC 27625
||||
Sbjct 329487 CTTC 329484
>seq729
Length=1207513
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/229 (70%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG-AGTCAG 27463
|||||| ||||| | ||||| | ||| | ||||| ||||| | | || ||| || |
Sbjct 71238 AATGCAGATCTTCTTAAAGACCATGACCAGTAAGACCATTAC-CATCAGATTGGAGCCCA 71296
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|||| | || || ||| | || || || || ||||||||||||| || || || |||
Sbjct 71297 GTGACACCACTGAGAATGTTAAAGCCAAGATCCAGGACAAGGAGGTTATCCCCCCTGACT 71356
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
||||| | || | ||||| | ||||| || || ||||| | |||| | ||||| |
Sbjct 71357 AGCAGAGACTGACCTTTGCCAGCAAGCACCTGGAAGATGAAC-ACCCCTGTCTGACTACA 71415
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| ||||| ||||| || || || || ||| || | |||||
Sbjct 71416 ACATCCAGAAGGAGTCCACCCTGCACCTGGTTCTGCACCTGAGGGGTGG 71464
>seq5
Length=13702985
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| |||||||||||||| | || || ||||||||| | || || |||||||| |||||
Sbjct 9285004 ATCCAGGACAAGGAGGGCGTCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAG 9284945
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
|| || ||| | |||||| | ||||| ||| ||| |||| ||||| || || ||
Sbjct 9284944 CTGGAAAATGGACATACCCTGTCTGACTACAATATCC---AGGAGTCCACCCTGCACCTG 9284888
Query 27613 GTCTTGCGTCTTCGCGGTGG 27632
| | |||| || | |||||
Sbjct 9284887 GCCCTGCGCCTGAGAGGTGG 9284868
>seq580
Length=1649027
Score = 82.4 bits (90), Expect = 9e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| |||||||| |||||||| ||||| ||||||||||| ||||| || || |||| |||
Sbjct 1583663 GGCATTCCTCCTGACCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGT 1583604
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGG 27595
|| || | ||||| || |||||||||
Sbjct 1583603 ACTCTGTCGGACTACAACATCCAAAAGG 1583576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570269031109360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |