Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq380 89.7 6e-13
seq163 87.8 2e-12
>seq380
Length=2352794
Score = 89.7 bits (98), Expect = 6e-13
Identities = 149/214 (70%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAA-TACATCCTTACTAA 22722
|||| | || |||||||| | || || ||||| || || | ||| | ||||| | ||
Sbjct 2067152 TTCACAAATGAGTTGTGCAATTCAGTCACCCTTTTTCACTTCAAACTTTTTCCTTGCCAA 2067093
Query 22723 AATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTA 22782
||||||||| | | || | ||||| |||||||| |||||| ||||| || ||||
Sbjct 2067092 AATTAAATAGTACAACACAAACGTTTCCTCTGTAATCATCATCTATGACACCAGCTCCTA 2067033
Query 22783 CATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTT 22842
|||| || || || || || || || || || |||| || ||||||||| | ||
Sbjct 2067032 CATCTATGAAGTGTTTTTCAGCTAAGCCAGAACTTGGAGCTACTCTTCCATAACAGCCAG 2066973
Query 22843 CCGGTATATCTATTATAATATCAGTCATTACTAA 22876
|| | |||||| ||| || || |||||||
Sbjct 2066972 AAGGAAGATCTATCTGAATGTCGGTTTTTACTAA 2066939
>seq163
Length=3864798
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729
|| ||||||| || ||||| |||||||| | || ||| | || || | || || ||
Sbjct 18375 GCTTTGTGGTGGTACTTTATATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 18434
Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789
|||| |||||| || ||||| || | || ||||| || |||| ||| ||||||
Sbjct 18435 CTGAGGAAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTT 18494
Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830
|| | | ||||| || ||||| ||| |||||||||||||
Sbjct 18495 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 18535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603137046772720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |