Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq380 89.7 6e-13 seq163 87.8 2e-12 >seq380 Length=2352794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAA-TACATCCTTACTAA 22722 |||| | || |||||||| | || || ||||| || || | ||| | ||||| | || Sbjct 2067152 TTCACAAATGAGTTGTGCAATTCAGTCACCCTTTTTCACTTCAAACTTTTTCCTTGCCAA 2067093 Query 22723 AATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTA 22782 ||||||||| | | || | ||||| |||||||| |||||| ||||| || |||| Sbjct 2067092 AATTAAATAGTACAACACAAACGTTTCCTCTGTAATCATCATCTATGACACCAGCTCCTA 2067033 Query 22783 CATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTT 22842 |||| || || || || || || || || || |||| || ||||||||| | || Sbjct 2067032 CATCTATGAAGTGTTTTTCAGCTAAGCCAGAACTTGGAGCTACTCTTCCATAACAGCCAG 2066973 Query 22843 CCGGTATATCTATTATAATATCAGTCATTACTAA 22876 || | |||||| ||| || || ||||||| Sbjct 2066972 AAGGAAGATCTATCTGAATGTCGGTTTTTACTAA 2066939 >seq163 Length=3864798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || ||||||| || ||||| |||||||| | || ||| | || || | || || || Sbjct 18375 GCTTTGTGGTGGTACTTTATATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 18434 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| |||||| || ||||| || | || ||||| || |||| ||| |||||| Sbjct 18435 CTGAGGAAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTT 18494 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || | | ||||| || ||||| ||| ||||||||||||| Sbjct 18495 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 18535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603137046772720