Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq23 206 4e-48
>seq23
Length=8387762
Score = 206 bits (228), Expect = 4e-48
Identities = 591/900 (66%), Gaps = 28/900 (3%)
Strand=Plus/Plus
Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731
|||||||| || ||| | | || ||| |||||||||| || ||| |||| | |||
Sbjct 3564679 CCCTGAGCAGGGCCGAGTTGGCCTTCCCCCTCGCCTACTCCATGGTGGTCCATGAGAAGG 3564738
Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791
|||||| |||||||| || ||| |||| | || ||||| |||||| |||||||||| |
Sbjct 3564739 TCGAGAACTTCGAGCGGCTGCTGCGGGCTGTGTATGCCCCCCAGAACATCTACTGCGTGC 3564798
Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851
|||||||| |||||| |||| |||| | ||| || |||| | ||||
Sbjct 3564799 ACGTGGACCAGAAGTCCCCCGACTCCTTCAAGGACGCGGTCAAGGGCATCATCTCCTGCT 3564858
Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911
|||| || || ||||||| | || |||||||| | ||||||| || |
Sbjct 3564859 TCCCCAATGTCTTCCTGGCCAGTAAGTTGGTGCGGGTGGTGTATGCCTCCTGGTCCCGGG 3564918
Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971
|||| || ||||||| ||||||| |||||| | ||| ||| |||| ||||
Sbjct 3564919 TGCAAGCAGACCTCAACTGCATGGAGGACCTTCTCCGGAGCCCGGTCCCCTGGAAGTACT 3564978
Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031
| |||||| ||||||| |||||||| |||||||||| ||||| |||| ||| |
Sbjct 3564979 TCCTCAACACCTGCGGGACCGACTTCCCCACCAAGACCAACGCCGAGATGGTGCTGGCCC 3565038
Query 14032 TGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCA---CAAGC 14088
| | | ||| || |||||| | ||||| |||| |||||| | | ||||
Sbjct 3565039 TCAGGTTGCTGAATGGGAAGAACAGCATGGAGTCAGAGG---TGCCCACCGAGTACAAGA 3565095
Query 14089 TGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTG-GTGGTCAACACCGGC 14147
| |||| |||| ||| | || | | | ||| | || ||||| |
Sbjct 3565096 GGTCCCGCT---GGAAATACCACTACGAGGTGACAGACACTGTGCGCGG----CACCGAC 3565148
Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207
| | ||||| ||| || || | ||| || || | || || || ||| ||| |
Sbjct 3565149 AAGCTCAAGGACCCTCCCCCAGAAAACCTCCAAATGTTCGTTGGCAATGCCTACATTGTG 3565208
Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC--CTGCTCATGC 14265
|| || ||| ||||| | || || || || || | || | | ||||
Sbjct 3565209 GTGTCCAGGGCCTTCGTCCAGCAGGTGCTGGAGAACC--CCAGATCCCAGCGGTTCATCG 3565266
Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325
| ||| || ||||||| |||||||| ||||||||||||||||| ||| |||||||
Sbjct 3565267 AGTGGGTCAAGGACACCTACAGCCCTGACGAGCACCTGTGGGCTACCCTGCAGAGGGCTC 3565326
Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385
| ||| ||| || |||| |||| ||||| | ||| ||| |||||| ||||
Sbjct 3565327 CCTGGATGCCTGGCTCTGACCCCTATCACCCCAAGTTCCACAACTCAGACATGAACGCCA 3565386
Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG--CCCTGTA 14443
| |||| | ||||||||||| | |||||||||| |||| | |||| |||| |
Sbjct 3565387 TTGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGGGACATCAGCCAGGGGGCACCCTATG 3565446
Query 14444 CCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAA 14503
| | | || ||| |||| | | | ||||||||| |||| || ||| || |
Sbjct 3565447 GACCCTGTTCGGGGGC--CCACCAGCGGGGCGTCTGCATCTACGGGGTGGGTGACCTGCA 3565504
Query 14504 GTG---GCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGA 14560
|| |||| ||| || |||||| | ||||||||||| ||| | || ||||||
Sbjct 3565505 CTGGATGCTGCAGA---CCCATCACCTGCTGGCCAACAAGTTTGACCCCAAGGTGGACGA 3565561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658691416705280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |