Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq23 206 4e-48 >seq23 Length=8387762 Score = 206 bits (228), Expect = 4e-48 Identities = 591/900 (66%), Gaps = 28/900 (3%) Strand=Plus/Plus Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731 |||||||| || ||| | | || ||| |||||||||| || ||| |||| | ||| Sbjct 3564679 CCCTGAGCAGGGCCGAGTTGGCCTTCCCCCTCGCCTACTCCATGGTGGTCCATGAGAAGG 3564738 Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791 |||||| |||||||| || ||| |||| | || ||||| |||||| |||||||||| | Sbjct 3564739 TCGAGAACTTCGAGCGGCTGCTGCGGGCTGTGTATGCCCCCCAGAACATCTACTGCGTGC 3564798 Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851 |||||||| |||||| |||| |||| | ||| || |||| | |||| Sbjct 3564799 ACGTGGACCAGAAGTCCCCCGACTCCTTCAAGGACGCGGTCAAGGGCATCATCTCCTGCT 3564858 Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911 |||| || || ||||||| | || |||||||| | ||||||| || | Sbjct 3564859 TCCCCAATGTCTTCCTGGCCAGTAAGTTGGTGCGGGTGGTGTATGCCTCCTGGTCCCGGG 3564918 Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 |||| || ||||||| ||||||| |||||| | ||| ||| |||| |||| Sbjct 3564919 TGCAAGCAGACCTCAACTGCATGGAGGACCTTCTCCGGAGCCCGGTCCCCTGGAAGTACT 3564978 Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031 | |||||| ||||||| |||||||| |||||||||| ||||| |||| ||| | Sbjct 3564979 TCCTCAACACCTGCGGGACCGACTTCCCCACCAAGACCAACGCCGAGATGGTGCTGGCCC 3565038 Query 14032 TGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCA---CAAGC 14088 | | | ||| || |||||| | ||||| |||| |||||| | | |||| Sbjct 3565039 TCAGGTTGCTGAATGGGAAGAACAGCATGGAGTCAGAGG---TGCCCACCGAGTACAAGA 3565095 Query 14089 TGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTG-GTGGTCAACACCGGC 14147 | |||| |||| ||| | || | | | ||| | || ||||| | Sbjct 3565096 GGTCCCGCT---GGAAATACCACTACGAGGTGACAGACACTGTGCGCGG----CACCGAC 3565148 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 | | ||||| ||| || || | ||| || || | || || || ||| ||| | Sbjct 3565149 AAGCTCAAGGACCCTCCCCCAGAAAACCTCCAAATGTTCGTTGGCAATGCCTACATTGTG 3565208 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC--CTGCTCATGC 14265 || || ||| ||||| | || || || || || | || | | |||| Sbjct 3565209 GTGTCCAGGGCCTTCGTCCAGCAGGTGCTGGAGAACC--CCAGATCCCAGCGGTTCATCG 3565266 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| || ||||||| |||||||| ||||||||||||||||| ||| ||||||| Sbjct 3565267 AGTGGGTCAAGGACACCTACAGCCCTGACGAGCACCTGTGGGCTACCCTGCAGAGGGCTC 3565326 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 | ||| ||| || |||| |||| ||||| | ||| ||| |||||| |||| Sbjct 3565327 CCTGGATGCCTGGCTCTGACCCCTATCACCCCAAGTTCCACAACTCAGACATGAACGCCA 3565386 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG--CCCTGTA 14443 | |||| | ||||||||||| | |||||||||| |||| | |||| |||| | Sbjct 3565387 TTGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGGGACATCAGCCAGGGGGCACCCTATG 3565446 Query 14444 CCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAA 14503 | | | || ||| |||| | | | ||||||||| |||| || ||| || | Sbjct 3565447 GACCCTGTTCGGGGGC--CCACCAGCGGGGCGTCTGCATCTACGGGGTGGGTGACCTGCA 3565504 Query 14504 GTG---GCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGA 14560 || |||| ||| || |||||| | ||||||||||| ||| | || |||||| Sbjct 3565505 CTGGATGCTGCAGA---CCCATCACCTGCTGGCCAACAAGTTTGACCCCAAGGTGGACGA 3565561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658691416705280