Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq110 143 2e-29
>seq110
Length=4795302
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||
Sbjct 96657 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 96598
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| | ||| || || ||||| |||| |
Sbjct 96597 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACC 96538
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | ||||||||||||||| || ||||||||
Sbjct 96537 ACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATGAG 96494
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290
|||| || || || || ||||||||||| || ||||| ||||| |||| ||| || || |
Sbjct 92552 TGTATTCGGCCCCAAAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCT 92493
Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350
| ||| ||| || ||||||| ||||||| || |||||||| ||||||||
Sbjct 92492 CTCTGGCGGAGAATCCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTC 92433
Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
| || ||||| ||| ||||| || | ||| ||||| ||
Sbjct 92432 TCACGCCCTTGGAAGACAGCTCCTTAGCGTTGGTGGATCC 92393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406281664077876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |