Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq110 156 4e-33
>seq110
Length=4795302
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||| ||||| || || ||||||||| |||||||||| ||||| || | |||
Sbjct 96485 GATCTGCCTCTCATGGCCCTGCCTCCGTGCCACGCCCTCTGCCAGTTCTATGTGGTGAAC 96544
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||| | || || | || ||||||||||| | || ||||| |||
Sbjct 96545 GGTGAGCTGTCCTGCCAGTTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCTTTC 96604
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| |||||||| ||||||||||| ||
Sbjct 96605 AACATCGCCAGCTACGCACTGCTCACCTACATGATCGCCCA 96645
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || || |||||||| ||||| || | |||
Sbjct 96645 TGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGCACACCCAGGCCC 96586
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||||| || | || || | ||||||||||||||| || ||| | || ||||| |||
Sbjct 96585 ATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 96526
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||||||| || || ||||| ||||| |||||
Sbjct 96525 CAGAGGGCGTGGCACGGAGGCAGGGCCATGAGAGGCAGATC 96485
Score = 125 bits (138), Expect = 6e-24
Identities = 120/154 (78%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | |||||||| || ||| ||| |||| |||||||| || |||||||||
Sbjct 92397 CCACCAACGCTAAGGAGCTGTCTTCCAAGGGCGTGAGAATCTGGGATGCCAACGGGTCTC 92456
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
||||||| |||||| | || ||| | | | ||||| || |||||||||||||| |
Sbjct 92457 GAGACTTCTTGGACAGCCTAGGATTCTCCGCCAGAGAGGAAGGGGACTTGGGCCCGGTTT 92516
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|||| || |||||||| ||||||||||| || ||
Sbjct 92517 ACGGCTTTCAGTGGAGGCACTTTGGGGCCGAATA 92550
Score = 125 bits (138), Expect = 6e-24
Identities = 120/154 (78%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || ||||||||||| |||||||| || ||||| |||||||||||||| || |||||
Sbjct 92550 TATTCGGCCCCAAAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCTCT 92491
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||| || | |||||| |||||||||||||||| || |||||||| ||
Sbjct 92490 CTGGCGGAGAATCCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTCTC 92431
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || |||||||| | ||| ||||
Sbjct 92430 ACGCCCTTGGAAGACAGCTCCTTAGCGTTGGTGG 92397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448229884166160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |