Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq110 156 4e-33 >seq110 Length=4795302 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || ||||||||| |||||||||| ||||| || | ||| Sbjct 96485 GATCTGCCTCTCATGGCCCTGCCTCCGTGCCACGCCCTCTGCCAGTTCTATGTGGTGAAC 96544 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||| | || || | || ||||||||||| | || ||||| ||| Sbjct 96545 GGTGAGCTGTCCTGCCAGTTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCTTTC 96604 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 96605 AACATCGCCAGCTACGCACTGCTCACCTACATGATCGCCCA 96645 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 96645 TGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGCACACCCAGGCCC 96586 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || | ||||||||||||||| || ||| | || ||||| ||| Sbjct 96585 ATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 96526 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||||||| || || ||||| ||||| ||||| Sbjct 96525 CAGAGGGCGTGGCACGGAGGCAGGGCCATGAGAGGCAGATC 96485 Score = 125 bits (138), Expect = 6e-24 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | |||||||| || ||| ||| |||| |||||||| || ||||||||| Sbjct 92397 CCACCAACGCTAAGGAGCTGTCTTCCAAGGGCGTGAGAATCTGGGATGCCAACGGGTCTC 92456 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | || ||| | | | ||||| || |||||||||||||| | Sbjct 92457 GAGACTTCTTGGACAGCCTAGGATTCTCCGCCAGAGAGGAAGGGGACTTGGGCCCGGTTT 92516 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| || |||||||| ||||||||||| || || Sbjct 92517 ACGGCTTTCAGTGGAGGCACTTTGGGGCCGAATA 92550 Score = 125 bits (138), Expect = 6e-24 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || ||||||||||| |||||||| || ||||| |||||||||||||| || ||||| Sbjct 92550 TATTCGGCCCCAAAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCTCT 92491 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| || | |||||| |||||||||||||||| || |||||||| || Sbjct 92490 CTGGCGGAGAATCCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTCTC 92431 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | ||| |||| Sbjct 92430 ACGCCCTTGGAAGACAGCTCCTTAGCGTTGGTGG 92397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448229884166160