Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq52 158 1e-33
seq10 118 9e-22
seq110 116 3e-21
>seq52
Length=6537636
Score = 158 bits (174), Expect = 1e-33
Identities = 177/234 (76%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATC-AAGCCCAGAAAACATGGC 1336
|| ||||| | ||||| |||||||| ||| |||| ||| ||| |||||||||||||
Sbjct 4975455 CAGGAAGTACTGATTGTGACATGGCAGAAAATTAA-GCAGGGAAGTCCAGAAAACATGGT 4975397
Query 1337 CACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACAT 1396
||| | || || |||| |||||||| ||||||| | || || |||||| | || ||
Sbjct 4975396 CACCTACAGCAAGAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAAGTAAATAT 4975337
Query 1397 AACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGA 1456
|| |||| | ||| |||| |||| || ||||||||||| || || |||| |||||
Sbjct 4975336 CACCCAGCTGGAACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGA 4975277
Query 1457 AGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAAT 1510
|| || || || ||||| || || || ||||| ||||||||||| ||||||||
Sbjct 4975276 TGGATGTTATAATTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAAT 4975223
Score = 82.4 bits (90), Expect = 6e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 1576 TAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACCAACAATGGTATGGAATTTTAATG 1635
|||||||||| || ||||| ||||| ||||||| || | || |||||||| || ||
Sbjct 4971834 TAAATGTTACTTGTTCTGCCAATGCACGCCCAGCTCCTATGATTTTATGGAATGTTTCTG 4971775
Query 1636 ATACAGACAGCTACAATAATACTGAAATTATAACCCACCCCAATGGAACAACATCTATTG 1695
||| | | || | ||||||||| || ||| ||||||||||| |||||| |
Sbjct 4971774 GATCAGGCTTTGAGAACAGTACTGAAATCATCTACCATCCCAATGGAACTACATCTGTCA 4971715
Query 1696 TCAGTGTTCTCTACATCAGAGATCCAAA 1723
||||||||| | ||| ||| |||||
Sbjct 4971714 CTAGTGTTCTCCATTTCAAAGACCCAAA 4971687
>seq10
Length=10948230
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||||| ||||| || |||||||||
Sbjct 7551199 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 7551258
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| || || || ||||| ||||| |||||||| | | || | |||| || ||||||
Sbjct 7551259 TTCGGCGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 7551318
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 7551319 ATCGCCTTGTGGATGACGGA 7551338
>seq110
Length=4795302
Score = 116 bits (128), Expect = 3e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||| || |||||||| || | || ||||||||| | || |||||
Sbjct 96657 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 96598
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|||||||| ||||||||| | || ||||||||||| ||||| || ||||| ||||| |
Sbjct 96597 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACC 96538
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
||||| ||||| | | | ||| || |||||||| |||||
Sbjct 96537 ACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATG 96496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414447486516892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |