Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq52 158 1e-33 seq10 118 9e-22 seq110 116 3e-21 >seq52 Length=6537636 Score = 158 bits (174), Expect = 1e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATC-AAGCCCAGAAAACATGGC 1336 || ||||| | ||||| |||||||| ||| |||| ||| ||| ||||||||||||| Sbjct 4975455 CAGGAAGTACTGATTGTGACATGGCAGAAAATTAA-GCAGGGAAGTCCAGAAAACATGGT 4975397 Query 1337 CACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACAT 1396 ||| | || || |||| |||||||| ||||||| | || || |||||| | || || Sbjct 4975396 CACCTACAGCAAGAACCATGGGGTTGTGCTTCAGCCTCCTTATAAGGATAAAGTAAATAT 4975337 Query 1397 AACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGA 1456 || |||| | ||| |||| |||| || ||||||||||| || || |||| ||||| Sbjct 4975336 CACCCAGCTGGAACTCAGAAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGA 4975277 Query 1457 AGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAAT 1510 || || || || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 4975276 TGGATGTTATAATTGTTTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAAT 4975223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1576 TAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACCAACAATGGTATGGAATTTTAATG 1635 |||||||||| || ||||| ||||| ||||||| || | || |||||||| || || Sbjct 4971834 TAAATGTTACTTGTTCTGCCAATGCACGCCCAGCTCCTATGATTTTATGGAATGTTTCTG 4971775 Query 1636 ATACAGACAGCTACAATAATACTGAAATTATAACCCACCCCAATGGAACAACATCTATTG 1695 ||| | | || | ||||||||| || ||| ||||||||||| |||||| | Sbjct 4971774 GATCAGGCTTTGAGAACAGTACTGAAATCATCTACCATCCCAATGGAACTACATCTGTCA 4971715 Query 1696 TCAGTGTTCTCTACATCAGAGATCCAAA 1723 ||||||||| | ||| ||| ||||| Sbjct 4971714 CTAGTGTTCTCCATTTCAAAGACCCAAA 4971687 >seq10 Length=10948230 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||||| ||||| || ||||||||| Sbjct 7551199 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 7551258 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | |||| || |||||| Sbjct 7551259 TTCGGCGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 7551318 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 7551319 ATCGCCTTGTGGATGACGGA 7551338 >seq110 Length=4795302 Score = 116 bits (128), Expect = 3e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || |||||||| || | || ||||||||| | || ||||| Sbjct 96657 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 96598 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| | || ||||||||||| ||||| || ||||| ||||| | Sbjct 96597 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACC 96538 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 ||||| ||||| | | | ||| || |||||||| ||||| Sbjct 96537 ACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATG 96496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414447486516892