Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq24 181 2e-40
seq412 138 3e-27
seq556 105 2e-17
seq608 102 2e-16
seq41 102 2e-16
seq39 102 2e-16
seq729 100 7e-16
seq5 93.3 1e-13
seq335 89.7 1e-12
seq951 86.0 1e-11
seq580 86.0 1e-11
>seq24
Length=8999101
Score = 181 bits (200), Expect = 2e-40
Identities = 175/225 (78%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| ||||| | ||||| ||||| |||||||| ||||| ||||| || |||| || ||
Sbjct 2890505 ACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGT 2890564
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|||||||||||||||||||| || || || || ||||| ||||||||||||| ||
Sbjct 2890565 ATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCC 2890624
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| || ||||||||||| |||||| || || || || || ||| || ||||||||
Sbjct 2890625 TTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAG 2890684
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| ||||| || ||||| ||||| || || | |||||| ||
Sbjct 2890685 CGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq412
Length=2039319
Score = 138 bits (152), Expect = 3e-27
Identities = 159/213 (75%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||| || |||||||| || ||||| || || || | | || | |||||||
Sbjct 1106577 AGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCT 1106636
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || ||||| || || | || ||| |||||
Sbjct 1106637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCC 1106695
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || || || |||||||||||| | || |||||||| ||||| |||
Sbjct 1106696 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 1106755
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || | || ||||| | ||| |||||||
Sbjct 1106756 TTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788
>seq556
Length=1594741
Score = 105 bits (116), Expect = 2e-17
Identities = 133/180 (74%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
||||||| ||||| ||||| ||||||| ||||| || || || || ||| | |
Sbjct 329484 GAAGTCTCGAAACAAGATGAAG--TGGACTCCTTTTGAATTTTGTAGTCA--AAG--TAC 329537
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014
|||||||| || || |||| || || || || | ||| || |||||||||| ||||
Sbjct 329538 GCCCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTT 329597
Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074
| || ||||||||||| ||||||||| | ||||| || || ||||||||||||||
Sbjct 329598 CTTTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAG 329657
>seq608
Length=1396534
Score = 102 bits (112), Expect = 2e-16
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| ||||| || || ||| ||| |||||||| || || | ||| || | ||||||||
Sbjct 1124035 GACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 1123976
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| |||||| || || ||||| || | || || |||| ||| |||||||| |||||
Sbjct 1123975 CAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTG 1123916
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
|||||| ||||| || || |||| ||| | ||| | || || ||||| || ||
Sbjct 1123915 GATCTTGGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTT 1123856
Query 211085 TCCCGTGAGAGTCTTTACAAA 211105
| || || |||| |||||
Sbjct 1123855 GTCAGTCAGGATCTTCACAAA 1123835
>seq41
Length=6870668
Score = 102 bits (112), Expect = 2e-16
Identities = 155/216 (72%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||| ||| |||| || || | ||| || | | |||
Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || ||||| | || | |||||||| | |
Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTAT-C 2879734
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| |||| ||||| || |||||||| || || |||| || || || ||||| ||
Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTC-ACTTCCAGGGTGATGGT 2879793
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || | || ||||| || || | ||||||||
Sbjct 2879794 TTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829
>seq39
Length=7040410
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || ||||| || | || |||||||| || | || |||||||||||||||||
Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|||||||| ||||||||||| | || |||||||||||||| || || || || ||
Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830
Query 211095 GTCTTTACAAACACCTGCATT 211115
||||| || || | |||||||
Sbjct 3825829 GTCTTCACGAAGATCTGCATT 3825809
>seq729
Length=1207513
Score = 100 bits (110), Expect = 7e-16
Identities = 154/215 (72%), Gaps = 5/215 (2%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || | |||| ||| ||||
Sbjct 71449 AGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGGTGTTC-ATCT 71391
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| ||||||| || ||| | || | || | |||||| || | | |||||||||
Sbjct 71390 TCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGGGATAACCTCCTTGTCC 71331
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080
|||||||| ||| || || || |||||||| | || | ||| || || || || |
Sbjct 71330 TGGATCTTGGCTTTAACATTCTCAGTGGTGTCACTGGGC-TCCAATCT-GATGGTAATGG 71273
Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|||| | || | ||||||| || | |||||||
Sbjct 71272 TCTTACTGGTCATGGTCTTTAAGAAGATCTGCATT 71238
>seq5
Length=13702985
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/125 (77%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||| | ||||| || |||||||| | |||| || || || | ||||| ||||| |
Sbjct 9284883 AGGGCCAGGTGCAGGGTGGACTCCT---GGATATTGTAGTCAGACAGGGTATGTCCATTT 9284939
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| || || || |||||||||
Sbjct 9284940 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGACGCCCTCCTTGTCC 9284999
Query 211023 TGGAT 211027
|||||
Sbjct 9285000 TGGAT 9285004
>seq335
Length=2667251
Score = 89.7 bits (98), Expect = 1e-12
Identities = 114/155 (74%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| ||||| || ||||| | |||||| ||||| | || | | ||||||
Sbjct 1092679 AGGACCAGGTGCAGAGTCGATTCTTTCTCGATGTTTTAATCATCT-GGATATTGCCATCT 1092737
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT--CCTTCCTTGT 211020
||||||||||||| || ||||| || | | || ||||| | | | |||||||| |
Sbjct 1092738 TCCAGCTGCTTGCTAGCAAAGATGAGCCTCTACTGATCAGGGGAATGTTGCCTTCCTTAT 1092797
Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||||| |||| || || ||||| |||
Sbjct 1092798 CCTGGATCTTGGTCTTCATATTCTCCATGGTATCA 1092832
>seq951
Length=571157
Score = 86.0 bits (94), Expect = 1e-11
Identities = 139/194 (72%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
||||||| | ||||| |||| ||| |||| ||||| | ||| || || | || | |
Sbjct 473223 GAAGTCTCAAAACAAGATGAAATGTGAACTCCTTTTG-ACGTTGTAGTCAG--AGTATGC 473279
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGA-TAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||||| ||| ||||| || || | | || | ||| |||||||||| || |||
Sbjct 473280 T--CATCTTCAAGCAATTTGCCAGCAAAAAATCAGTC-TTGCTGGTCAGGAGAAATCCCT 473336
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| || ||||| ||||| |||||| || | || | || ||| ||||||||||||
Sbjct 473337 TCTTTATCCTGTATCTTGGCTTTCACATTCTATATAGGATCTGAGGGTTCAACCTCGAGC 473396
Query 211074 GTGATCGTCTTTCC 211087
| |||||||| ||
Sbjct 473397 ATTATCGTCTTCCC 473410
>seq580
Length=1649027
Score = 86.0 bits (94), Expect = 1e-11
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || |||| || || | |||||||||||||||||||| || || ||
Sbjct 1583578 TTTTGGATGTTGTAGTCCGACAGAGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATC 1583637
Query 210987 AGGCGTTGTTGGTCAGGAGGAA 211008
|| ||||| |||||||||||||
Sbjct 1583638 AGACGTTGCTGGTCAGGAGGAA 1583659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159065815962095
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