Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq24 181 2e-40 seq412 138 3e-27 seq556 105 2e-17 seq608 102 2e-16 seq41 102 2e-16 seq39 102 2e-16 seq729 100 7e-16 seq5 93.3 1e-13 seq335 89.7 1e-12 seq951 86.0 1e-11 seq580 86.0 1e-11 >seq24 Length=8999101 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| ||||| |||||||| ||||| ||||| || |||| || || Sbjct 2890505 ACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGT 2890564 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||||||||||| || || || || ||||| ||||||||||||| || Sbjct 2890565 ATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCC 2890624 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||||||||| |||||| || || || || || ||| || |||||||| Sbjct 2890625 TTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAG 2890684 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || ||||| ||||| || || | |||||| || Sbjct 2890685 CGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq412 Length=2039319 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||| || |||||||| || ||||| || || || | | || | ||||||| Sbjct 1106577 AGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCT 1106636 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || || | || ||| ||||| Sbjct 1106637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCC 1106695 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || |||||||||||| | || |||||||| ||||| ||| Sbjct 1106696 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 1106755 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || | || ||||| | ||| ||||||| Sbjct 1106756 TTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788 >seq556 Length=1594741 Score = 105 bits (116), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||| ||||| ||||| ||||||| ||||| || || || || ||| | | Sbjct 329484 GAAGTCTCGAAACAAGATGAAG--TGGACTCCTTTTGAATTTTGTAGTCA--AAG--TAC 329537 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||| || || |||| || || || || | ||| || |||||||||| |||| Sbjct 329538 GCCCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTT 329597 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 | || ||||||||||| ||||||||| | ||||| || || |||||||||||||| Sbjct 329598 CTTTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTCGAGAG 329657 >seq608 Length=1396534 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||| || || ||| ||| |||||||| || || | ||| || | |||||||| Sbjct 1124035 GACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 1123976 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || |||||| || || ||||| || | || || |||| ||| |||||||| ||||| Sbjct 1123975 CAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTG 1123916 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| ||||| || || |||| ||| | ||| | || || ||||| || || Sbjct 1123915 GATCTTGGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTT 1123856 Query 211085 TCCCGTGAGAGTCTTTACAAA 211105 | || || |||| ||||| Sbjct 1123855 GTCAGTCAGGATCTTCACAAA 1123835 >seq41 Length=6870668 Score = 102 bits (112), Expect = 2e-16 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||| ||| |||| || || | ||| || | | ||| Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| | || | |||||||| | | Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTAT-C 2879734 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| |||| ||||| || |||||||| || || |||| || || || ||||| || Sbjct 2879735 TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTC-ACTTCCAGGGTGATGGT 2879793 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | || ||||| || || | |||||||| Sbjct 2879794 TTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829 >seq39 Length=7040410 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || | || |||||||| || | || ||||||||||||||||| Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| ||||||||||| | || |||||||||||||| || || || || || Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | ||||||| Sbjct 3825829 GTCTTCACGAAGATCTGCATT 3825809 >seq729 Length=1207513 Score = 100 bits (110), Expect = 7e-16 Identities = 154/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | |||| ||| |||| Sbjct 71449 AGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGGTGTTC-ATCT 71391 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||||| || ||| | || | || | |||||| || | | ||||||||| Sbjct 71390 TCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGGGATAACCTCCTTGTCC 71331 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||| ||| || || || |||||||| | || | ||| || || || || | Sbjct 71330 TGGATCTTGGCTTTAACATTCTCAGTGGTGTCACTGGGC-TCCAATCT-GATGGTAATGG 71273 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||| | || | ||||||| || | ||||||| Sbjct 71272 TCTTACTGGTCATGGTCTTTAAGAAGATCTGCATT 71238 >seq5 Length=13702985 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||| | ||||| || |||||||| | |||| || || || | ||||| ||||| | Sbjct 9284883 AGGGCCAGGTGCAGGGTGGACTCCT---GGATATTGTAGTCAGACAGGGTATGTCCATTT 9284939 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || || || ||||||||| Sbjct 9284940 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGACGCCCTCCTTGTCC 9284999 Query 211023 TGGAT 211027 ||||| Sbjct 9285000 TGGAT 9285004 >seq335 Length=2667251 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| || ||||| | |||||| ||||| | || | | |||||| Sbjct 1092679 AGGACCAGGTGCAGAGTCGATTCTTTCTCGATGTTTTAATCATCT-GGATATTGCCATCT 1092737 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT--CCTTCCTTGT 211020 ||||||||||||| || ||||| || | | || ||||| | | | |||||||| | Sbjct 1092738 TCCAGCTGCTTGCTAGCAAAGATGAGCCTCTACTGATCAGGGGAATGTTGCCTTCCTTAT 1092797 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||||| |||| || || ||||| ||| Sbjct 1092798 CCTGGATCTTGGTCTTCATATTCTCCATGGTATCA 1092832 >seq951 Length=571157 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||| | ||||| |||| ||| |||| ||||| | ||| || || | || | | Sbjct 473223 GAAGTCTCAAAACAAGATGAAATGTGAACTCCTTTTG-ACGTTGTAGTCAG--AGTATGC 473279 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGA-TAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||| ||| ||||| || || | | || | ||| |||||||||| || ||| Sbjct 473280 T--CATCTTCAAGCAATTTGCCAGCAAAAAATCAGTC-TTGCTGGTCAGGAGAAATCCCT 473336 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || ||||| ||||| |||||| || | || | || ||| |||||||||||| Sbjct 473337 TCTTTATCCTGTATCTTGGCTTTCACATTCTATATAGGATCTGAGGGTTCAACCTCGAGC 473396 Query 211074 GTGATCGTCTTTCC 211087 | |||||||| || Sbjct 473397 ATTATCGTCTTCCC 473410 >seq580 Length=1649027 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || |||| || || | |||||||||||||||||||| || || || Sbjct 1583578 TTTTGGATGTTGTAGTCCGACAGAGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATC 1583637 Query 210987 AGGCGTTGTTGGTCAGGAGGAA 211008 || ||||| ||||||||||||| Sbjct 1583638 AGACGTTGCTGGTCAGGAGGAA 1583659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159065815962095