Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq24 116 3e-21 >seq24 Length=8999101 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 2890729 AAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCC 2890670 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| | || ||| | ||| | || || || |||||||| | || || || Sbjct 2890669 TCAGATACTATAGAGAATGTGAAAGC-CAAGATCCAGGATAAAGAAGGCATTCCTCCTGA 2890611 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | || ||||| ||||| || |||||||| | | ||| | || || Sbjct 2890610 CCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTA 2890551 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| ||||||||| | ||| | ||||| || |||| || || Sbjct 2890550 CAACATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985694587924