Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq412 125 2e-23 seq478 105 2e-17 seq556 91.5 4e-13 seq605 89.7 1e-12 seq501 84.2 5e-11 seq45 84.2 5e-11 >seq412 Length=2039319 Score = 125 bits (138), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||| || ||||| || || |||| ||||| || | || ||| | ||||| Sbjct 1106576 CAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATC 1106635 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || || |||| ||| Sbjct 1106636 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCCT-GTC 1106694 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 1106695 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 1106754 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||| || || |||||| |||||| Sbjct 1106755 CTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788 >seq478 Length=1700938 Score = 105 bits (116), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 ||| || |||| | ||||| ||| || | || || ||||| || | || ||||| ||| Sbjct 1615951 GGTGATGACCAAATCTACAATGTTGTTGTCACAGCTCATGCATTCATCATAATTTT-TTT 1616009 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 | ||||| || | || |||| || || || || ||||| || || | || |||||| Sbjct 1616010 ATGGTTATACCTATCATATTAGGAGGCTTTGGGAACTGATTAGTACCCCTTATAATTGGT 1616069 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || ||||||||||| ||||| | ||||||||||| || |||||| |||| ||||| Sbjct 1616070 GCCCCTGATATGGCCTTTCCTCAAATAAACAATATAAGCTTCTGATTATTACCTCCTTCA 1616129 Query 7723 TTATTTCT 7730 || |||| Sbjct 1616130 TTCCTTCT 1616137 >seq556 Length=1594741 Score = 91.5 bits (100), Expect = 4e-13 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||| ||||| || || |||| || ||||| | ||||| || ||||| | Sbjct 329484 GAAGTCTCGAAACAAGATGAAG--TGGACTCCTTTTGAATTTTGTAGTC----AAAGTAC 329537 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||||||| || || | ||| || || |||| ||| || || || |||||||||| Sbjct 329538 GCCCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTT 329597 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 | || || |||||||| ||||| | ||||| ||||| | ||| || || Sbjct 329598 CTTTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTC 329652 >seq605 Length=1423599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||| ||||| |||| |||||| || | |||||||| ||||| | | Sbjct 312057 TTCAGGGTGACCAAAGAATCAAAATAGATGTTGGTATAAAATAGGATCACCTCCTCTGGC 311998 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| | ||||||| ||| | ||| ||||| Sbjct 311997 AGGATCAAAAAAGGTTGTATTAAGATTGCGATCTGTTAA 311959 >seq501 Length=1755529 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| |||||||| || ||||| || ||||| ||||| || | |||||| | | Sbjct 1647424 AGTCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGAGTCTTGTAGTCAGACAAAGTACGC 1647365 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||||||||| | | ||||| || | | || | | || || || ||||| ||||| Sbjct 1647364 CCATCTTCTAGAGGTCTGCCAGCAAAATTTAATCTTGGCTGATCAGGAGGAATTCCTTCT 1647305 Query 225616 TTGTCTTGGATCTT 225629 || ||||||| ||| Sbjct 1647304 TTATCTTGGACCTT 1647291 >seq45 Length=6757098 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || || ||||| || || || |||||||| || || |||||||| || |||||||||||| Sbjct 5187023 TGTCCGTCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACGTCACCTGCTTGT 5186964 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || | ||||| || || || || || |||||||| || Sbjct 5186963 GTCTCAATGACAGGCAAAGCAGTCAGGGAGCCACCACCGAA 5186923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192442534187282