Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq412 125 2e-23
seq478 105 2e-17
seq556 91.5 4e-13
seq605 89.7 1e-12
seq501 84.2 5e-11
seq45 84.2 5e-11
>seq412
Length=2039319
Score = 125 bits (138), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| |||| || ||||| || || |||| ||||| || | || ||| | |||||
Sbjct 1106576 CAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATC 1106635
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || ||||| || || || || |||| |||
Sbjct 1106636 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCCT-GTC 1106694
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1106695 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 1106754
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| || ||| || || |||||| ||||||
Sbjct 1106755 CTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788
>seq478
Length=1700938
Score = 105 bits (116), Expect = 2e-17
Identities = 137/188 (73%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602
||| || |||| | ||||| ||| || | || || ||||| || | || ||||| |||
Sbjct 1615951 GGTGATGACCAAATCTACAATGTTGTTGTCACAGCTCATGCATTCATCATAATTTT-TTT 1616009
Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662
| ||||| || | || |||| || || || || ||||| || || | || ||||||
Sbjct 1616010 ATGGTTATACCTATCATATTAGGAGGCTTTGGGAACTGATTAGTACCCCTTATAATTGGT 1616069
Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
|| ||||||||||| ||||| | ||||||||||| || |||||| |||| |||||
Sbjct 1616070 GCCCCTGATATGGCCTTTCCTCAAATAAACAATATAAGCTTCTGATTATTACCTCCTTCA 1616129
Query 7723 TTATTTCT 7730
|| ||||
Sbjct 1616130 TTCCTTCT 1616137
>seq556
Length=1594741
Score = 91.5 bits (100), Expect = 4e-13
Identities = 126/175 (72%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
|||||||| ||||| || || |||| || ||||| | ||||| || ||||| |
Sbjct 329484 GAAGTCTCGAAACAAGATGAAG--TGGACTCCTTTTGAATTTTGTAGTC----AAAGTAC 329537
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
|||||||||||| || || | ||| || || |||| ||| || || || ||||||||||
Sbjct 329538 GCCCATCTTCTAGTTGTTTGCTAGCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTT 329597
Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668
| || || |||||||| ||||| | ||||| ||||| | ||| || ||
Sbjct 329598 CTTTATCCTGGATCTTGGCTTTCACGTTCTTTATGGTATCTGATGATTCAACCTC 329652
>seq605
Length=1423599
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| |||||||| ||||| |||| |||||| || | |||||||| ||||| | |
Sbjct 312057 TTCAGGGTGACCAAAGAATCAAAATAGATGTTGGTATAAAATAGGATCACCTCCTCTGGC 311998
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|||||||||||| | ||||||| ||| | ||| |||||
Sbjct 311997 AGGATCAAAAAAGGTTGTATTAAGATTGCGATCTGTTAA 311959
>seq501
Length=1755529
Score = 84.2 bits (92), Expect = 5e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||||| |||||||| || ||||| || ||||| ||||| || | |||||| | |
Sbjct 1647424 AGTCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGAGTCTTGTAGTCAGACAAAGTACGC 1647365
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||||||||| | | ||||| || | | || | | || || || ||||| |||||
Sbjct 1647364 CCATCTTCTAGAGGTCTGCCAGCAAAATTTAATCTTGGCTGATCAGGAGGAATTCCTTCT 1647305
Query 225616 TTGTCTTGGATCTT 225629
|| ||||||| |||
Sbjct 1647304 TTATCTTGGACCTT 1647291
>seq45
Length=6757098
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536
|| || ||||| || || || |||||||| || || |||||||| || ||||||||||||
Sbjct 5187023 TGTCCGTCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACGTCACCTGCTTGT 5186964
Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577
|| || | ||||| || || || || || |||||||| ||
Sbjct 5186963 GTCTCAATGACAGGCAAAGCAGTCAGGGAGCCACCACCGAA 5186923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192442534187282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |