Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq110 154 1e-32 >seq110 Length=4795302 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 96657 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 96598 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || ||||||||||| | |||||| || ||||| |||| | Sbjct 96597 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACC 96538 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||| ||||||||||| |||||||||||| Sbjct 96537 ACATAGAACTGGCAGAGGGCGTGGCACGGAGGCAGGGCCATGAGA 96493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||| || ||||| ||||| |||| ||| || || || ||| ||| Sbjct 92538 AAGTGCCTCCACTGAAAGCCGTAAACCGGGCCCAAGTCCCCTTCCTCTCTGGCGGAGAAT 92479 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||||| || |||||||| |||||||| | || ||||| Sbjct 92478 CCTAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCATCCCAGATTCTCACGCCCTTGGAA 92419 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | ||| ||||| || Sbjct 92418 GACAGCTCCTTAGCGTTGGTGGATCC 92393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134474488458