Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq418 320 1e-82
seq30 307 9e-79
seq602 306 3e-78
seq380 113 4e-20
seq92 107 2e-18
seq446 93.3 4e-14
>seq418
Length=2079112
Score = 320 bits (354), Expect = 1e-82
Identities = 600/874 (69%), Gaps = 31/874 (4%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| ||| || ||||| |||||||||||||| || ||||| || |||||||| |||||
Sbjct 761098 TACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAA 761157
Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCA 4385
||||| | | || || || || || |||| || | | || |||
Sbjct 761158 TGGATTCTCTACTCTGAAAACCTTG-----CTGAAGCCCAGCTCCAGTATAAGTCTGTCC 761212
Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445
|| |||||||| || ||||| |||| | |||||| || || || | |||| ||
Sbjct 761213 GCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGAGATTCACTGGC 761272
Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505
| || | ||| | ||||| |||||||| | || || | ||||| ||| | | |
Sbjct 761273 AAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGACAATTATTTCTCTGACT 761332
Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565
| | | | ||||||| ||| | | | |||| |||||||||||||||||||||
Sbjct 761333 CTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGCAAAATCACAATGG 761392
Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625
| || || ||||||||||| || | || ||||| || | || ||||| || ||||
Sbjct 761393 AGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGACCAGGCATCAATCCTCGT 761452
Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685
|| |||||||| ||||| | ||||| || |||||| |||| || ||||| || || |
Sbjct 761453 TTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTCCTTCCACTGCTCTA 761512
Query 4686 AACGCTACTA-ATCGGGACCCGAACGAGCTGGCTT---TGTCTTTAATCCATTTTAATGC 4741
|| ||| ||| || | | | | || |||||| |||| |||||| || ||
Sbjct 761513 AAGGCTCCTACAT--GTTCTCCAT--AGGTGGCTTCTTTGTCCCCAATCCAGCGCAAGGC 761568
Query 4742 CCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACT 4798
||| | || || ||||| || || || ||||| | |||||||| || | ||| ||
Sbjct 761569 CCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCT 761628
Query 4799 TTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857
| || ||| |||| ||||| || || || || || ||||||||||| ||||
Sbjct 761629 CTCTT----TGGAATCTT-----TAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTA 761679
Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917
| ||||| || |||||||| || || || || || || |||||||| | |||||||| |
Sbjct 761680 TGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAACTTCTT 761739
Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977
| ||| | || || |||||||| || ||||| || |||||||| || || || ||||
Sbjct 761740 GGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGAAAGCCA 761799
Query 4978 AAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037
||||| |||||||| || || ||||| || || | |||||| | | || |
Sbjct 761800 GCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCT 761859
Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097
| | | || || || ||| | ||||||| || || || ||||| || ||||| ||
Sbjct 761860 TGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATACATCTGCC 761919
Query 5098 AAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|||||||| | || | || |||| ||||||||
Sbjct 761920 AAATATCATGGTATTCGATGGGAAAGATGACAAA 761953
>seq30
Length=8517879
Score = 307 bits (340), Expect = 9e-79
Identities = 606/887 (68%), Gaps = 27/887 (3%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || ||| || || ||| | ||||| |||||||||||||| || ||||| || |||
Sbjct 2591951 TGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCC 2591892
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--A 4374
||||| ||||| ||||| | | || || || || || |||| || |
Sbjct 2591891 ATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTG-----CTGAAGCCCAGCTCCAGTA 2591837
Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434
| || ||| || || ||||| || ||||| |||| | |||||| || || || |
Sbjct 2591836 TGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGA 2591777
Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494
|||| || | || | ||| | ||||| |||||||| | || || | ||||
Sbjct 2591776 GATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCATTGACAATTA 2591717
Query 4495 TAT--CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552
||| || | | | | | | || ||||||| || | | | |||| |||||||||
Sbjct 2591716 TATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACATTAAACACGC 2591657
Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612
|||||||||||| | || || ||||||||||| || || || ||||| || | |||||
Sbjct 2591656 AAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGGG 2591597
Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672
||| | |||| || || ||||| ||||| | ||||| || ||||||||||| || ||
Sbjct 2591596 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCC 2591537
Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAAT 4729
||| || || ||||| ||||||| | || | | | ||| ||||||| |||
Sbjct 2591536 TTCAACTGCTGCAAAGGCTACTACACATTCTCC--ATG-GGTGGCTTCTTTGTCCCCAAT 2591480
Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789
||| || ||||| | || || ||||| || || || ||||| | |||||||| ||
Sbjct 2591479 CCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAA 2591420
Query 4790 ---TAATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845
|||| || | || ||| |||| || ||||| || || || || || ||||
Sbjct 2591419 GAGGAATTCCCTCTCTT----TGGAATCTTTAACGTAAGTATCGATGAGGAGACTGTACA 2591364
Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905
||||||| ||||| ||||| || |||||||| || || || || || | |||||||| |
Sbjct 2591363 TTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTGTAA 2591304
Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965
|||||||| | | ||| | || || |||||||| | ||||| || ||||||||||
Sbjct 2591303 TCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTGGCTG 2591244
Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT-AAGTTTTTTCCAG 5024
| || || |||| ||||| |||||||| || || ||||| || | | | ||||
Sbjct 2591243 CGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGGCCTCCCAG 2591184
Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084
|| | | || | | | || || || ||| | |||||||| || || || || ||
Sbjct 2591183 TGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGCCTTC 2591124
Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|| ||||| ||| |||||| | || | || |||| ||||||||
Sbjct 2591123 TTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077
>seq602
Length=1640730
Score = 306 bits (338), Expect = 3e-78
Identities = 585/857 (68%), Gaps = 19/857 (2%)
Strand=Plus/Plus
Query 4284 AAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCG 4343
||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| | |
Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248
Query 4344 TTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCAGCTACAAATTCTA 4398
|| || ||| || || |||| || | | || ||| || || |||||
Sbjct 122249 CTGAAAACTTTG-----CTGAAGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAG 122303
Query 4399 TATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCA 4458
| ||||| |||| | ||| || || || || | | | || | || | ||| |
Sbjct 122304 TGTACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAA 122363
Query 4459 AAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATG 4518
||||| |||||||| | || || | |||||| ||| | | | | | | || |
Sbjct 122364 GGAACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAG 122423
Query 4519 GTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC 4578
|||||| || | | | |||| ||| ||||||||||||||||| | || || ||||
Sbjct 122424 GTTTATGTAGCAGATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTC 122482
Query 4579 TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA 4638
||||||| ||| | || ||||| || | || ||||| || |||| || || ||||| |
Sbjct 122483 TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGA 122542
Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698
|||| | ||||| || | ||||||||| || ||||| || || ||||| ||||||| |
Sbjct 122543 ATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACAC 122602
Query 4699 GGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758
|| | | | ||||||| |||||| | || ||||| | || || ||||
Sbjct 122603 ATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCT 122662
Query 4759 TAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTT-TTTCAAATGGGTCT 4814
| || || || ||||| | |||||||| || | ||| || | ||| |||| |
Sbjct 122663 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATG----T 122718
Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874
| ||| ||||| || || || || || ||||||||||| ||||| ||||| || ||||||
Sbjct 122719 TTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATC 122778
Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934
|| || || || || || | |||||||| | |||||||| | | ||| | | ||
Sbjct 122779 TGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACC 122838
Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994
|||||||| || ||||| || |||||||| || ||||| || | ||||| ||||||||
Sbjct 122839 AAGTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAA 122898
Query 4995 TACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCT 5054
|| || ||||| || || | |||||| | | || || | | || || ||
Sbjct 122899 TATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCC 122958
Query 5055 TCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGA 5114
||| | |||||||| || || || || || || ||||| ||| |||||| | || |
Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018
Query 5115 ATCGGAAGTATGACAAA 5131
|| |||| ||||||||
Sbjct 123019 ATGGGAAAGATGACAAA 123035
>seq380
Length=2352794
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829
|||| |||||||| ||||| || | | ||||| || || || ||| || ||||||| |
Sbjct 2066940 TAGTAAAAACCGACATTCAGATAGATCTTCCTTCTGGCTGTTATGGAAGAGTAGCTCCAA 2066999
Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889
| ||||| || || | |||||||| || || || || || ||||| |||||| || |
Sbjct 2067000 GTTCTGGCTTAGCTGAAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGATGATT 2067059
Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAA 31946
| |||||||||||| | |||| | ||||||||||| |||||| | || | |
Sbjct 2067060 ACAGAGGAAACGTTTGTGTTGTACTATTTAATTTTGGCAAGGAAAAAGTTTGAAG--TGA 2067117
Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
||||||| || | | || ||||| ||||| |||
Sbjct 2067118 AAAAGGGTGACTGAATTGCACAACTCATTTGTGAA 2067152
>seq92
Length=5367877
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||| |||||||| || || || || ||||| || | ||| ||||| | ||||| ||||
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| |||||||||||||| || || || || |||||||| || |||||||| || || || |
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797
Query 4690 CTAC 4693
||||
Sbjct 3850796 CTAC 3850793
Score = 82.4 bits (90), Expect = 7e-11
Identities = 97/130 (75%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
||||| | | ||| || ||||| ||||| || || ||||||||||||||||| ||||| |
Sbjct 3842372 AAAATATCT-TACCAAATTTTCATTTACGATTCCATCACTGGCTGCAAAAAAGGCCAAGA 3842314
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| || | || || || |||| || |||||||| || | || || |
Sbjct 3842313 TGTGAGAGATAAAATATTTCTCATCCGGTGTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 3842254
Query 5041 TTAAATCAAC 5050
|| |||||
Sbjct 3842253 ACAAGTCAAC 3842244
>seq446
Length=2046506
Score = 93.3 bits (102), Expect = 4e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| || || || ||||| || | || ||||| | |||| || ||
Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489
Query 4692 ACTA 4695
||||
Sbjct 492488 ACTA 492485
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| ||||| || || || || || ||||||||||| ||||| ||||| || |||
Sbjct 489517 TCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCA 489458
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||||| || || || || || | |||||||| | ||||||||
Sbjct 489457 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427019397317399
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