Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq418 320 1e-82 seq30 307 9e-79 seq602 306 3e-78 seq380 113 4e-20 seq92 107 2e-18 seq446 93.3 4e-14 >seq418 Length=2079112 Score = 320 bits (354), Expect = 1e-82 Identities = 600/874 (69%), Gaps = 31/874 (4%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| |||||||||||||| || ||||| || |||||||| ||||| Sbjct 761098 TACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAA 761157 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCA 4385 ||||| | | || || || || || |||| || | | || ||| Sbjct 761158 TGGATTCTCTACTCTGAAAACCTTG-----CTGAAGCCCAGCTCCAGTATAAGTCTGTCC 761212 Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 || |||||||| || ||||| |||| | |||||| || || || | |||| || Sbjct 761213 GCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGAGATTCACTGGC 761272 Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505 | || | ||| | ||||| |||||||| | || || | ||||| ||| | | | Sbjct 761273 AAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGACAATTATTTCTCTGACT 761332 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | | | | ||||||| ||| | | | |||| ||||||||||||||||||||| Sbjct 761333 CTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGCAAAATCACAATGG 761392 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 | || || ||||||||||| || | || ||||| || | || ||||| || |||| Sbjct 761393 AGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGACCAGGCATCAATCCTCGT 761452 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || |||||||| ||||| | ||||| || |||||| |||| || ||||| || || | Sbjct 761453 TTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTCCTTCCACTGCTCTA 761512 Query 4686 AACGCTACTA-ATCGGGACCCGAACGAGCTGGCTT---TGTCTTTAATCCATTTTAATGC 4741 || ||| ||| || | | | | || |||||| |||| |||||| || || Sbjct 761513 AAGGCTCCTACAT--GTTCTCCAT--AGGTGGCTTCTTTGTCCCCAATCCAGCGCAAGGC 761568 Query 4742 CCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACT 4798 ||| | || || ||||| || || || ||||| | |||||||| || | ||| || Sbjct 761569 CCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCT 761628 Query 4799 TTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857 | || ||| |||| ||||| || || || || || ||||||||||| |||| Sbjct 761629 CTCTT----TGGAATCTT-----TAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTA 761679 Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917 | ||||| || |||||||| || || || || || || |||||||| | |||||||| | Sbjct 761680 TGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAACTTCTT 761739 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977 | ||| | || || |||||||| || ||||| || |||||||| || || || |||| Sbjct 761740 GGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGAAAGCCA 761799 Query 4978 AAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037 ||||| |||||||| || || ||||| || || | |||||| | | || | Sbjct 761800 GCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCT 761859 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097 | | | || || || ||| | ||||||| || || || ||||| || ||||| || Sbjct 761860 TGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATACATCTGCC 761919 Query 5098 AAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||||| | || | || |||| |||||||| Sbjct 761920 AAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq30 Length=8517879 Score = 307 bits (340), Expect = 9e-79 Identities = 606/887 (68%), Gaps = 27/887 (3%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| || || ||| | ||||| |||||||||||||| || ||||| || ||| Sbjct 2591951 TGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCC 2591892 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--A 4374 ||||| ||||| ||||| | | || || || || || |||| || | Sbjct 2591891 ATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTG-----CTGAAGCCCAGCTCCAGTA 2591837 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | || ||| || || ||||| || ||||| |||| | |||||| || || || | Sbjct 2591836 TGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGA 2591777 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 |||| || | || | ||| | ||||| |||||||| | || || | |||| Sbjct 2591776 GATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCATTGACAATTA 2591717 Query 4495 TAT--CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 ||| || | | | | | | || ||||||| || | | | |||| ||||||||| Sbjct 2591716 TATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACATTAAACACGC 2591657 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 |||||||||||| | || || ||||||||||| || || || ||||| || | ||||| Sbjct 2591656 AAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGGG 2591597 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | |||| || || ||||| ||||| | ||||| || ||||||||||| || || Sbjct 2591596 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCC 2591537 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAAT 4729 ||| || || ||||| ||||||| | || | | | ||| ||||||| ||| Sbjct 2591536 TTCAACTGCTGCAAAGGCTACTACACATTCTCC--ATG-GGTGGCTTCTTTGTCCCCAAT 2591480 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || ||||| | || || ||||| || || || ||||| | |||||||| || Sbjct 2591479 CCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAA 2591420 Query 4790 ---TAATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 |||| || | || ||| |||| || ||||| || || || || || |||| Sbjct 2591419 GAGGAATTCCCTCTCTT----TGGAATCTTTAACGTAAGTATCGATGAGGAGACTGTACA 2591364 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||||| ||||| ||||| || |||||||| || || || || || | |||||||| | Sbjct 2591363 TTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTGTAA 2591304 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||||||| | | ||| | || || |||||||| | ||||| || |||||||||| Sbjct 2591303 TCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTGGCTG 2591244 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT-AAGTTTTTTCCAG 5024 | || || |||| ||||| |||||||| || || ||||| || | | | |||| Sbjct 2591243 CGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGGCCTCCCAG 2591184 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 || | | || | | | || || || ||| | |||||||| || || || || || Sbjct 2591183 TGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGCCTTC 2591124 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| ||| |||||| | || | || |||| |||||||| Sbjct 2591123 TTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077 >seq602 Length=1640730 Score = 306 bits (338), Expect = 3e-78 Identities = 585/857 (68%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 4284 AAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCG 4343 ||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| | | Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248 Query 4344 TTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCAGCTACAAATTCTA 4398 || || ||| || || |||| || | | || ||| || || ||||| Sbjct 122249 CTGAAAACTTTG-----CTGAAGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAG 122303 Query 4399 TATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCA 4458 | ||||| |||| | ||| || || || || | | | || | || | ||| | Sbjct 122304 TGTACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAA 122363 Query 4459 AAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATG 4518 ||||| |||||||| | || || | |||||| ||| | | | | | | || | Sbjct 122364 GGAACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAG 122423 Query 4519 GTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC 4578 |||||| || | | | |||| ||| ||||||||||||||||| | || || |||| Sbjct 122424 GTTTATGTAGCAGATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTC 122482 Query 4579 TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA 4638 ||||||| ||| | || ||||| || | || ||||| || |||| || || ||||| | Sbjct 122483 TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGA 122542 Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698 |||| | ||||| || | ||||||||| || ||||| || || ||||| ||||||| | Sbjct 122543 ATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACAC 122602 Query 4699 GGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758 || | | | ||||||| |||||| | || ||||| | || || |||| Sbjct 122603 ATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCT 122662 Query 4759 TAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTT-TTTCAAATGGGTCT 4814 | || || || ||||| | |||||||| || | ||| || | ||| |||| | Sbjct 122663 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATG----T 122718 Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874 | ||| ||||| || || || || || ||||||||||| ||||| ||||| || |||||| Sbjct 122719 TTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATC 122778 Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934 || || || || || || | |||||||| | |||||||| | | ||| | | || Sbjct 122779 TGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACC 122838 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994 |||||||| || ||||| || |||||||| || ||||| || | ||||| |||||||| Sbjct 122839 AAGTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAA 122898 Query 4995 TACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCT 5054 || || ||||| || || | |||||| | | || || | | || || || Sbjct 122899 TATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCC 122958 Query 5055 TCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGA 5114 ||| | |||||||| || || || || || || ||||| ||| |||||| | || | Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018 Query 5115 ATCGGAAGTATGACAAA 5131 || |||| |||||||| Sbjct 123019 ATGGGAAAGATGACAAA 123035 >seq380 Length=2352794 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829 |||| |||||||| ||||| || | | ||||| || || || ||| || ||||||| | Sbjct 2066940 TAGTAAAAACCGACATTCAGATAGATCTTCCTTCTGGCTGTTATGGAAGAGTAGCTCCAA 2066999 Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889 | ||||| || || | |||||||| || || || || || ||||| |||||| || | Sbjct 2067000 GTTCTGGCTTAGCTGAAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGATGATT 2067059 Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAA 31946 | |||||||||||| | |||| | ||||||||||| |||||| | || | | Sbjct 2067060 ACAGAGGAAACGTTTGTGTTGTACTATTTAATTTTGGCAAGGAAAAAGTTTGAAG--TGA 2067117 Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || | | || ||||| ||||| ||| Sbjct 2067118 AAAAGGGTGACTGAATTGCACAACTCATTTGTGAA 2067152 >seq92 Length=5367877 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || || || || ||||| || | ||| ||||| | ||||| |||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| || || || || |||||||| || |||||||| || || || | Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 4690 CTAC 4693 |||| Sbjct 3850796 CTAC 3850793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||||| | | ||| || ||||| ||||| || || ||||||||||||||||| ||||| | Sbjct 3842372 AAAATATCT-TACCAAATTTTCATTTACGATTCCATCACTGGCTGCAAAAAAGGCCAAGA 3842314 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| || | || || || |||| || |||||||| || | || || | Sbjct 3842313 TGTGAGAGATAAAATATTTCTCATCCGGTGTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 3842254 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 3842253 ACAAGTCAAC 3842244 >seq446 Length=2046506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || ||||| || | || ||||| | |||| || || Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 4692 ACTA 4695 |||| Sbjct 492488 ACTA 492485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct 489517 TCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCA 489458 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | |||||||| | |||||||| Sbjct 489457 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427019397317399