Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq24 147 5e-30 seq412 114 3e-20 seq39 111 3e-19 seq729 104 5e-17 seq646 95.1 3e-14 seq41 95.1 3e-14 seq1618 93.3 9e-14 seq740 89.7 1e-12 seq650 89.7 1e-12 seq197 89.7 1e-12 seq9 89.7 1e-12 seq556 87.8 4e-12 seq98 87.8 4e-12 >seq24 Length=8999101 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| | | || ||||| | ||| || ||||| ||||||||||| | Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || || || || || ||||| |||| |||||| |||||| || Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || || || |||||||| ||||| || | || ||||| || || | ||||| Sbjct 2890619 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| || || | ||||| ||||| |||||||| || Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq412 Length=2039319 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||| || ||||| | | ||| || || ||||| |||||||||| Sbjct 1106561 ACCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGA 1106620 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||| ||||| || || || || || |||||||||| | || ||||| || Sbjct 1106621 CACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1106680 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||| ||| ||||||||||| || || | ||||| ||||| | || || Sbjct 1106681 TATGCCCTCCT-GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 ||||| ||||| |||||||| ||| ||||| | ||| ||||||| ||| Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATTGTCA 1106792 >seq39 Length=7040410 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| | || |||||| || || ||||||||||| |||||||| || Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| | || || ||||||||||| || ||||| |||| Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830 Query 283080 GTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||||||| || Sbjct 3825829 GTCTTCACGAAGATCTGCATTGTC 3825806 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3804771 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3804829 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3811291 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3811349 >seq729 Length=1207513 Score = 104 bits (114), Expect = 5e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | |||| | || ||||| || | ||| || || |||||||||||||||| Sbjct 71465 ACCACCCCTCAGGTGCAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 71406 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | | | |||| || || || || | ||||||| ||| | || | |||| || Sbjct 71405 CAG-GGGTGTTCATCTTCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGG 71347 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||| |||||||| ||||| || | || | ||||| | || | Sbjct 71346 GATAACCTCCTTGTCCTGGATCTTGGCTTTAACATTCTCAGTGGTGTCACTGGGCTCCAA 71287 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 | || || || ||||||| |||| ||||| | ||| ||||||||| ||| ||| Sbjct 71286 TCTGATGGTAATGGTCTTACTGGTCATGGTCTTTAAGAAGATCTGCATTGTCAAATA 71230 >seq646 Length=1375836 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| || || || | ||||| ||||| | ||||| | Sbjct 361911 TACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCT 361970 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||| ||||| ||||| ||||||| ||||| ||||| |||||||| ||| Sbjct 361971 CGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTC 362020 >seq41 Length=6870668 Score = 95.1 bits (104), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGC-GAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929 || |||| | |||| |||| ||||| || | || |||| ||| ||||||||||| Sbjct 2879600 AATCACCCCACAGGAAGAAGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCA 2879659 Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 | ||| |||| || || || || || || || |||||||| | | || |||| | Sbjct 2879660 GAAAGAGTGCAGCTGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGT--CGG 2879717 Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || ||||| || ||| |||| || || || | ||||| || || || || Sbjct 2879718 GGGATGCCTTCCTTATC-TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTC 2879776 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || ||||| || || || ||| ||||| ||||| || |||||||| Sbjct 2879777 ACTTCCAGGGTGATGGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829 >seq1618 Length=105872 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 44431 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 44489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 41353 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 41411 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 70377 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 70435 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 89854 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 89912 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 105200 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 105258 >seq740 Length=1116153 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 758763 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 758821 >seq650 Length=1370792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 28987 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29045 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 35905 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 35963 >seq197 Length=3815976 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 234551 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 234493 >seq9 Length=10989404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 6494393 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6494335 >seq556 Length=1594741 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || ||||||||| ||| | || ||||| ||||||||||| | ||||| Sbjct 329511 TCCTTTTGAATTTTGTAGTCA--AAG--TACGCCCATCTTCTAGTTGTTTGCTAGCAAAA 329566 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||| || ||| |||||||| || || || |||||||| ||||| ||| | Sbjct 329567 ATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCTTTCACGTTC 329626 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 | || || || || | ||| || ||||||| Sbjct 329627 TTTATGGTATCTGATGATTCAACCTCGAGAG 329657 >seq98 Length=4884892 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || |||||||| || |||||||| || || || | ||||| ||||| | || Sbjct 1108504 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCC 1108445 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATAC 283109 ||||| || ||||| ||||| || |||| ||||| ||||| ||||||||||| | ||| Sbjct 1108444 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTAC 1108385 Query 283110 AAATAT 283115 | |||| Sbjct 1108384 AGATAT 1108379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046661373959162