Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq24 147 5e-30
seq412 114 3e-20
seq39 111 3e-19
seq729 104 5e-17
seq646 95.1 3e-14
seq41 95.1 3e-14
seq1618 93.3 9e-14
seq740 89.7 1e-12
seq650 89.7 1e-12
seq197 89.7 1e-12
seq9 89.7 1e-12
seq556 87.8 4e-12
seq98 87.8 4e-12
>seq24
Length=8999101
Score = 147 bits (162), Expect = 5e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| | | || ||||| | ||| || ||||| ||||||||||| |
Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | ||||| || || || || || ||||| |||| |||||| |||||| ||
Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || || || |||||||| ||||| || | || ||||| || || | |||||
Sbjct 2890619 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||| ||||| || || | ||||| ||||| |||||||| ||
Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq412
Length=2039319
Score = 114 bits (126), Expect = 3e-20
Identities = 166/233 (71%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | ||||| || ||||| | | ||| || || ||||| ||||||||||
Sbjct 1106561 ACCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGA 1106620
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| |||| ||||| || || || || || |||||||||| | || ||||| ||
Sbjct 1106621 CACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1106680
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||| ||| ||||||||||| || || | ||||| ||||| | || ||
Sbjct 1106681 TATGCCCTCCT-GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104
||||| ||||| |||||||| ||| ||||| | ||| ||||||| |||
Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATTGTCA 1106792
>seq39
Length=7040410
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
||||||||||||| | || |||||| || || ||||||||||| |||||||| ||
Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| | || || ||||||||||| || ||||| ||||
Sbjct 3825889 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAGG 3825830
Query 283080 GTCTTAACGAATATCTGCATTTTC 283103
||||| ||||| ||||||||| ||
Sbjct 3825829 GTCTTCACGAAGATCTGCATTGTC 3825806
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 3804771 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3804829
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 3811291 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3811349
>seq729
Length=1207513
Score = 104 bits (114), Expect = 5e-17
Identities = 166/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | |||| | || ||||| || | ||| || || ||||||||||||||||
Sbjct 71465 ACCACCCCTCAGGTGCAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 71406
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| | | | |||| || || || || | ||||||| ||| | || | |||| ||
Sbjct 71405 CAG-GGGTGTTCATCTTCCAGGTGCTTGCTGGCAAAGGTCAGTCTCTGCTAGTCAGGGGG 71347
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||| |||||||| ||||| || | || | ||||| | || |
Sbjct 71346 GATAACCTCCTTGTCCTGGATCTTGGCTTTAACATTCTCAGTGGTGTCACTGGGCTCCAA 71287
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108
| || || || ||||||| |||| ||||| | ||| ||||||||| ||| |||
Sbjct 71286 TCTGATGGTAATGGTCTTACTGGTCATGGTCTTTAAGAAGATCTGCATTGTCAAATA 71230
>seq646
Length=1375836
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
||||||||||||| |||||||| || || || | ||||| ||||| | ||||| |
Sbjct 361911 TACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCT 361970
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103
|||| ||||| ||||| ||||||| ||||| ||||| |||||||| |||
Sbjct 361971 CGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTC 362020
>seq41
Length=6870668
Score = 95.1 bits (104), Expect = 3e-14
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 282871 AACCACCACGCAGGC-GAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929
|| |||| | |||| |||| ||||| || | || |||| ||| |||||||||||
Sbjct 2879600 AATCACCCCACAGGAAGAAGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCA 2879659
Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989
| ||| |||| || || || || || || || |||||||| | | || |||| |
Sbjct 2879660 GAAAGAGTGCAGCTGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGT--CGG 2879717
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
|| || || ||||| || ||| |||| || || || | ||||| || || || ||
Sbjct 2879718 GGGATGCCTTCCTTATC-TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTC 2879776
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| || ||||| || || || ||| ||||| ||||| || ||||||||
Sbjct 2879777 ACTTCCAGGGTGATGGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829
>seq1618
Length=105872
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 44431 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 44489
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 41353 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 41411
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 70377 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 70435
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 89854 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 89912
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 105200 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 105258
>seq740
Length=1116153
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 758763 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 758821
>seq650
Length=1370792
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 28987 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29045
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 35905 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 35963
>seq197
Length=3815976
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 234551 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 234493
>seq9
Length=10989404
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 6494393 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6494335
>seq556
Length=1594741
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/151 (74%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| || ||||||||| ||| | || ||||| ||||||||||| | |||||
Sbjct 329511 TCCTTTTGAATTTTGTAGTCA--AAG--TACGCCCATCTTCTAGTTGTTTGCTAGCAAAA 329566
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | | ||| || ||| |||||||| || || || |||||||| ||||| ||| |
Sbjct 329567 ATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCTTTCACGTTC 329626
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059
| || || || || | ||| || |||||||
Sbjct 329627 TTTATGGTATCTGATGATTCAACCTCGAGAG 329657
>seq98
Length=4884892
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
|| || |||||||| || |||||||| || || || | ||||| ||||| | ||
Sbjct 1108504 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCC 1108445
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATAC 283109
||||| || ||||| ||||| || |||| ||||| ||||| ||||||||||| | |||
Sbjct 1108444 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTAC 1108385
Query 283110 AAATAT 283115
| ||||
Sbjct 1108384 AGATAT 1108379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046661373959162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |