Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq602 237 2e-57
seq418 232 7e-56
seq30 221 1e-52
seq92 102 8e-17
seq415 89.7 5e-13
seq15 89.7 5e-13
seq214 82.4 8e-11
>seq602
Length=1640730
Score = 237 bits (262), Expect = 2e-57
Identities = 406/589 (69%), Gaps = 0/589 (0%)
Strand=Plus/Plus
Query 23504 ATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATG 23563
|| |||| |||||||||||||| || || ||||| || ||||| | | |||| |||||||
Sbjct 122447 ATTAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATG 122506
Query 23564 TTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAA 23623
| | || ||||| ||||||||||| || | ||| ||||| | ||||| || | ||||
Sbjct 122507 TAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAA 122566
Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683
|||| || || || || || |||||||| || | || | ||| | || || | | |
Sbjct 122567 AGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGT 122626
Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743
| |||||| | | ||||| |||||| |||||||| ||||| ||||| |
Sbjct 122627 CCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAG 122686
Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803
| || ||||| || | |||| || | | || || ||||| || || | ||| |
Sbjct 122687 CGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGACTGT 122746
Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863
|||||||||| || || ||||| || |||||||| || ||||| ||||| | ||||| |
Sbjct 122747 ACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTG 122806
Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923
| ||||| || | ||| | || | || ||||| || || || |||||||| |
Sbjct 122807 TAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCACTGG 122866
Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCC 23983
| || || |||||||| |||| |||||||| ||| || |||| | | | ||
Sbjct 122867 CCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCC 122926
Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCAC 24043
| | | || || || || | || || || ||| |||||||||| ||| |||
Sbjct 122927 AGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGCCT 122986
Query 24044 GCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092
||||||||| |||| ||||||| | || || ||||| || || ||
Sbjct 122987 TCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035
>seq418
Length=2079112
Score = 232 bits (256), Expect = 7e-56
Identities = 588/887 (66%), Gaps = 17/887 (2%)
Strand=Plus/Plus
Query 23212 CCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGA 23270
||||| | ||||| ||||| || | |||| || || || || || || || || |||||
Sbjct 761078 CCCATCCTCTGATACTCCCCTACTC-TCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGA 761136
Query 23271 TATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACATGATAAT 23328
|| || |||||||| ||||||||||| || | | | | ||| | | |
Sbjct 761137 AATGTTCTCCATAAAGTCAAATGGATTCTC--TACTCTGAAAACCTTGCTGAAGCCCAGC 761194
Query 23329 TCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATA 23388
||| || ||| || || || ||||||||||| || || ||| ||| |||| ||
Sbjct 761195 TCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATC 761254
Query 23389 CCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCT 23448
|| || || || ||||| | || || | ||| | ||| || || ||||
Sbjct 761255 CCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTG 761314
Query 23449 TTAATTATTTGAACAATAACT-TCTTCACTA--GGTGGATATTTTAAATACTTAAACAAT 23505
|||||||| | | ||| ||| | | | ||| || | | || || |||| |
Sbjct 761315 ACAATTATTT---CTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATT 761371
Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565
||||| |||||||||||||| || || ||||| || ||||| | | ||| ||||||||
Sbjct 761372 AAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTA 761431
Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625
| || ||||| ||||||||||| |||| ||| ||||| | ||||| || || ||| ||
Sbjct 761432 AGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAG 761491
Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685
|| || || || || || |||||| | | | || ||| | || || | | ||
Sbjct 761492 AAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCC 761551
Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745
|||||| | ||||| |||||| |||||||| ||||| ||||| ||
Sbjct 761552 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCG 761611
Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805
|| ||||| || || | || | | | | || ||||| || || | ||| |||
Sbjct 761612 TTGAAGAGGAA-----TTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTAC 761666
Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865
|||||||| || || ||||| || |||||||| || ||||| ||||| || ||||| |
Sbjct 761667 ATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTA 761726
Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925
| ||||| || | ||| | | | || ||||| || || || |||||||| ||
Sbjct 761727 ATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCC 761786
Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985
|| |||||||| || |||| |||||||| ||| || |||| | | | |||
Sbjct 761787 GCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAG 761846
Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045
| | || || || || | || || || ||| ||||||||| ||| ||| |
Sbjct 761847 TGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTC 761906
Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092
|||||||| |||||||||||| | || || ||||| || || ||
Sbjct 761907 TTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953
>seq30
Length=8517879
Score = 221 bits (244), Expect = 1e-52
Identities = 408/597 (68%), Gaps = 1/597 (0%)
Strand=Plus/Minus
Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556
|| |||| |||||| |||||||||||||| || || ||||| || ||||| | |||||
Sbjct 2591673 TTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTC 2591614
Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616
|||||||| | || ||||| | ||||||||| || | ||| ||||| | ||||| ||
Sbjct 2591613 GAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 2591554
Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676
|| |||||||| || || ||||| || |||||||| || | || | ||| || ||
Sbjct 2591553 CCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCT 2591494
Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736
| | || |||||| | ||||| |||||| |||||||| |||||
Sbjct 2591493 TCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 2591434
Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796
||||| || || ||||| || | |||| |||| | | || ||||| || ||
Sbjct 2591433 TCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGG 2591374
Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856
| ||| ||||||||||| || || ||||| || |||||||| || ||||| ||||| |
Sbjct 2591373 AGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAG 2591314
Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916
||||| | | ||||| || | ||| | | | || ||||| | || || |||
Sbjct 2591313 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCA 2591254
Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA-GTTGATAA 23975
||||| || || |||||||| || |||| |||||||| ||| || ||| |||
Sbjct 2591253 TCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGG 2591194
Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035
| ||| | | || || | || | || || || ||| |||||||||| ||
Sbjct 2591193 GGCCTCCCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 2591134
Query 24036 CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092
| ||| ||||||||| |||| ||||||| | || || ||||| || || ||
Sbjct 2591133 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077
>seq92
Length=5367877
Score = 102 bits (112), Expect = 8e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || || | ||||| ||||| || | ||| ||||| | |||| |||||
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||||||||| ||||| || ||||| ||||||||||| || || ||||| || ||||
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797
Query 23651 CCAC 23654
| ||
Sbjct 3850796 CTAC 3850793
>seq415
Length=2134662
Score = 89.7 bits (98), Expect = 5e-13
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446
|| ||||||| || |||| ||| |||||| || |||| |||||||||||| ||||
Sbjct 1504926 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCAGCCTCAGCCTCCCAAGTA 1504867
Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGC 8480
||||||| |||||||| | ||||||||||| |||
Sbjct 1504866 GCTGGGACTACAGGCACACGCCACCACGCCCAGC 1504833
>seq15
Length=10322312
Score = 89.7 bits (98), Expect = 5e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| || |||| ||| |||||||| ||||||||||| |||||||| |
Sbjct 3450294 CTCCTGGGCTCAAGCGATCCTCCAGCCCCAGCCTCCCAAGTAGCTGGGACTACAGGCATA 3450353
Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTT 8496
||||||| ||| |||| ||||| | |||||
Sbjct 3450354 TGCCACCAAGCCTAGCTCTTTTTTTTTTTTTT 3450385
>seq214
Length=3787388
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446
|| ||||||| || |||| ||| ||||||||| |||| |||||||||||| ||||
Sbjct 90085 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCTATCCTCCAGCCTCAGCCTCCCAAGTA 90144
Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476
||||||| |||||||| |||||||| ||
Sbjct 90145 GCTGGGACTACAGGCACGCGCCACCACACC 90174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521450172564200
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