Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq602 237 2e-57 seq418 232 7e-56 seq30 221 1e-52 seq92 102 8e-17 seq415 89.7 5e-13 seq15 89.7 5e-13 seq214 82.4 8e-11 >seq602 Length=1640730 Score = 237 bits (262), Expect = 2e-57 Identities = 406/589 (69%), Gaps = 0/589 (0%) Strand=Plus/Plus Query 23504 ATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATG 23563 || |||| |||||||||||||| || || ||||| || ||||| | | |||| ||||||| Sbjct 122447 ATTAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATG 122506 Query 23564 TTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAA 23623 | | || ||||| ||||||||||| || | ||| ||||| | ||||| || | |||| Sbjct 122507 TAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAA 122566 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 |||| || || || || || |||||||| || | || | ||| | || || | | | Sbjct 122567 AGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGT 122626 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 | |||||| | | ||||| |||||| |||||||| ||||| ||||| | Sbjct 122627 CCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAG 122686 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | || ||||| || | |||| || | | || || ||||| || || | ||| | Sbjct 122687 CGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGACTGT 122746 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 |||||||||| || || ||||| || |||||||| || ||||| ||||| | ||||| | Sbjct 122747 ACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTG 122806 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | ||||| || | ||| | || | || ||||| || || || |||||||| | Sbjct 122807 TAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCACTGG 122866 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCC 23983 | || || |||||||| |||| |||||||| ||| || |||| | | | || Sbjct 122867 CCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCC 122926 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCAC 24043 | | | || || || || | || || || ||| |||||||||| ||| ||| Sbjct 122927 AGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGCCT 122986 Query 24044 GCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 ||||||||| |||| ||||||| | || || ||||| || || || Sbjct 122987 TCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035 >seq418 Length=2079112 Score = 232 bits (256), Expect = 7e-56 Identities = 588/887 (66%), Gaps = 17/887 (2%) Strand=Plus/Plus Query 23212 CCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGA 23270 ||||| | ||||| ||||| || | |||| || || || || || || || || ||||| Sbjct 761078 CCCATCCTCTGATACTCCCCTACTC-TCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGA 761136 Query 23271 TATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACATGATAAT 23328 || || |||||||| ||||||||||| || | | | | ||| | | | Sbjct 761137 AATGTTCTCCATAAAGTCAAATGGATTCTC--TACTCTGAAAACCTTGCTGAAGCCCAGC 761194 Query 23329 TCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATA 23388 ||| || ||| || || || ||||||||||| || || ||| ||| |||| || Sbjct 761195 TCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATC 761254 Query 23389 CCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCT 23448 || || || || ||||| | || || | ||| | ||| || || |||| Sbjct 761255 CCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTG 761314 Query 23449 TTAATTATTTGAACAATAACT-TCTTCACTA--GGTGGATATTTTAAATACTTAAACAAT 23505 |||||||| | | ||| ||| | | | ||| || | | || || |||| | Sbjct 761315 ACAATTATTT---CTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATT 761371 Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| |||||||||||||| || || ||||| || ||||| | | ||| |||||||| Sbjct 761372 AAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTA 761431 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 | || ||||| ||||||||||| |||| ||| ||||| | ||||| || || ||| || Sbjct 761432 AGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAG 761491 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || || || || || || |||||| | | | || ||| | || || | | || Sbjct 761492 AAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCC 761551 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 |||||| | ||||| |||||| |||||||| ||||| ||||| || Sbjct 761552 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCG 761611 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || ||||| || || | || | | | | || ||||| || || | ||| ||| Sbjct 761612 TTGAAGAGGAA-----TTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTAC 761666 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 |||||||| || || ||||| || |||||||| || ||||| ||||| || ||||| | Sbjct 761667 ATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTA 761726 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||| || | ||| | | | || ||||| || || || |||||||| || Sbjct 761727 ATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCC 761786 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 || |||||||| || |||| |||||||| ||| || |||| | | | ||| Sbjct 761787 GCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAG 761846 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | || || || || | || || || ||| ||||||||| ||| ||| | Sbjct 761847 TGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTC 761906 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 |||||||| |||||||||||| | || || ||||| || || || Sbjct 761907 TTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq30 Length=8517879 Score = 221 bits (244), Expect = 1e-52 Identities = 408/597 (68%), Gaps = 1/597 (0%) Strand=Plus/Minus Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 || |||| |||||| |||||||||||||| || || ||||| || ||||| | ||||| Sbjct 2591673 TTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTC 2591614 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 |||||||| | || ||||| | ||||||||| || | ||| ||||| | ||||| || Sbjct 2591613 GAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 2591554 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || |||||||| || || ||||| || |||||||| || | || | ||| || || Sbjct 2591553 CCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCT 2591494 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 | | || |||||| | ||||| |||||| |||||||| ||||| Sbjct 2591493 TCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 2591434 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || || ||||| || | |||| |||| | | || ||||| || || Sbjct 2591433 TCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGG 2591374 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | ||| ||||||||||| || || ||||| || |||||||| || ||||| ||||| | Sbjct 2591373 AGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAG 2591314 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | ||||| || | ||| | | | || ||||| | || || ||| Sbjct 2591313 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCA 2591254 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA-GTTGATAA 23975 ||||| || || |||||||| || |||| |||||||| ||| || ||| ||| Sbjct 2591253 TCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGG 2591194 Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 | ||| | | || || | || | || || || ||| |||||||||| || Sbjct 2591193 GGCCTCCCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 2591134 Query 24036 CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 | ||| ||||||||| |||| ||||||| | || || ||||| || || || Sbjct 2591133 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077 >seq92 Length=5367877 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | |||| ||||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| ||||| || ||||| ||||||||||| || || ||||| || |||| Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 23651 CCAC 23654 | || Sbjct 3850796 CTAC 3850793 >seq415 Length=2134662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| || |||| |||||||||||| |||| Sbjct 1504926 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCAGCCTCAGCCTCCCAAGTA 1504867 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGC 8480 ||||||| |||||||| | ||||||||||| ||| Sbjct 1504866 GCTGGGACTACAGGCACACGCCACCACGCCCAGC 1504833 >seq15 Length=10322312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || |||| ||| |||||||| ||||||||||| |||||||| | Sbjct 3450294 CTCCTGGGCTCAAGCGATCCTCCAGCCCCAGCCTCCCAAGTAGCTGGGACTACAGGCATA 3450353 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTT 8496 ||||||| ||| |||| ||||| | ||||| Sbjct 3450354 TGCCACCAAGCCTAGCTCTTTTTTTTTTTTTT 3450385 >seq214 Length=3787388 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| ||||||||| |||| |||||||||||| |||| Sbjct 90085 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCTATCCTCCAGCCTCAGCCTCCCAAGTA 90144 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||||||| |||||||| |||||||| || Sbjct 90145 GCTGGGACTACAGGCACGCGCCACCACACC 90174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521450172564200