Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq24 134 1e-26
seq412 87.8 1e-12
seq41 87.8 1e-12
seq39 86.0 5e-12
>seq24
Length=8999101
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||||||||| || || ||||| ||| ||||||||| |||||||| || |
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || ||||||||||| || ||||| |||| ||| ||||| || | |||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| ||||| || ||| ||||| |||| | ||| |||| || || | || || ||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTT-GGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| | ||| || ||||| || ||||||||||||||||| || |||||
Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq412
Length=2039319
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/219 (70%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | || ||||||| || ||| |||||| ||||| ||||| || |
Sbjct 1106562 CCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGAC 1106621
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
| || | || ||||||||||| || |||||||||| | |||||| |||| ||
Sbjct 1106622 ACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGT 1106681
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| || ||| | ||| ||||| ||| | | ||| | |||||||| || |||||
Sbjct 1106682 ATGCCCTCC-TGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328
||| | || || ||||| || | |||||||||| |||
Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAA 1106778
>seq41
Length=6870668
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/231 (70%), Gaps = 10/231 (4%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGC-GCTCGTCGTC 44187
|||||||| || || ||| | ||| ||||||| || | || || ||| ||| ||
Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCT-GTCTTC 2879679
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || |||||||| | | |||||| || | || | |||||||| || |
Sbjct 2879680 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTATCTGG 2879737
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||| ||||| | | ||||| ||| | || ||| |||| || || || ||
Sbjct 2879738 G-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA---TGA--TGTGAATGAAAATA 44353
|| | |||||||||||||||||||||| ||| ||| | ||||||||
Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTGACCTGTTAGTGAAAATA 2879847
>seq39
Length=7040410
Score = 86.0 bits (94), Expect = 5e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
||||||||||||| | |||||| || | || | || ||||| ||| ||||| |
Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
|||| |||| | ||||||||| || |||||||| | || || || || || || ||
Sbjct 3825889 TTCAC-GTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAG 3825831
Query 44317 GGTCTTCACGAAGATTTGCAT 44337
||||||||||||||| |||||
Sbjct 3825830 GGTCTTCACGAAGATCTGCAT 3825810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359964940016451
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |