Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq24 134 1e-26 seq412 87.8 1e-12 seq41 87.8 1e-12 seq39 86.0 5e-12 >seq24 Length=8999101 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||||||||| || || ||||| ||| ||||||||| |||||||| || | Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || ||||| |||| ||| ||||| || | ||| Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| |||| | ||| |||| || || | || || || Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTT-GGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | ||| || ||||| || ||||||||||||||||| || ||||| Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq412 Length=2039319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||||||| || ||| |||||| ||||| ||||| || | Sbjct 1106562 CCACCCCTCAGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGAC 1106621 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | || | || ||||||||||| || |||||||||| | |||||| |||| || Sbjct 1106622 ACAGTGCATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGT 1106681 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||| | ||| ||||| ||| | | ||| | |||||||| || ||||| Sbjct 1106682 ATGCCCTCC-TGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1106739 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||| | || || ||||| || | |||||||||| ||| Sbjct 1106740 CTCGAGGGTGATGGTCTTACCAATCAGGGTCTTCATGAA 1106778 >seq41 Length=6870668 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/231 (70%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGC-GCTCGTCGTC 44187 |||||||| || || ||| | ||| ||||||| || | || || ||| ||| || Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCT-GTCTTC 2879679 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| | | |||||| || | || | |||||||| || | Sbjct 2879680 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTATCTGG 2879737 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||| ||||| | | ||||| ||| | || ||| |||| || || || || Sbjct 2879738 G-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA---TGA--TGTGAATGAAAATA 44353 || | |||||||||||||||||||||| ||| ||| | |||||||| Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTGACCTGTTAGTGAAAATA 2879847 >seq39 Length=7040410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| | |||||| || | || | || ||||| ||| ||||| | Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| |||| | ||||||||| || |||||||| | || || || || || || || Sbjct 3825889 TTCAC-GTTCTCGATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAG 3825831 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||||||||| ||||| Sbjct 3825830 GGTCTTCACGAAGATCTGCAT 3825810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359964940016451