Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq216 150 3e-31
seq42 84.2 3e-11
>seq216
Length=3482710
Score = 150 bits (166), Expect = 3e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313
|||||||||||| |||| ||| |||||||||||| || ||||| || ||||| ||||
Sbjct 698577 TGGTCTGGAACAAACGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACA 698518
Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373
| ||||| ||||||| ||||| || |||| |||||||| || || || |||| ||| |
Sbjct 698517 CTCTGTTATGTTCCCGTAGCCAAATGATGGCATACATCATCAGGCCTGGCACCATGCCGA 698458
Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433
| |||| || || ||||| | | | || ||| || | | || || |||||||||
Sbjct 698457 AGACCTCATGCCCCACAGCAAAGTGTAGGTGTTCTGGGATATGTGGTGGGTAGATCATGG 698398
Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| ||||||||| | ||| || |||| ||| || ||||| ||||
Sbjct 698397 AGACCTGAGTGTCTTTGACTGTGGGAGGGTACACTTCTCCATCAATTATCT 698347
Score = 102 bits (112), Expect = 1e-16
Identities = 141/196 (72%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 9644 ATTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTC 9703
||||| |||||||| || |||| |||||| ||||| || || ||| | ||| |||
Sbjct 697195 ATTGT-CTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTC 697137
Query 9704 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 9763
| || ||||| || || || || ||| |||| ||||||||||| | || |||||||||
Sbjct 697136 TTGAAGAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGG 697077
Query 9764 GGATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGC 9823
||||| ||| |||| | | | || ||| ||||||||||| | | | ||| ||
Sbjct 697076 GGATCAGGAATGAACTTTTTTCTTAGGAGAAACTTTTCCACAACTTCTTTTGAATCAGGA 697017
Query 9824 AGCTTTGTTTTACCTG 9839
|||| | | || ||||
Sbjct 697016 AGCTCTTTCTTCCCTG 697001
Score = 95.1 bits (104), Expect = 2e-14
Identities = 203/298 (68%), Gaps = 4/298 (1%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| ||| |||| | |||| ||||| || | |||||||| || || |
Sbjct 699213 CTTACCCTGCCAGCTCTTTGCCTGCTGAAAGATTCAACAAACTGGGTAAGTCCATGTTCC 699154
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063
| | |||||||||||||||| ||| | ||||| || | |||||||| | |
Sbjct 699153 AGTAAGATGGAATTGTTGTAGAGGAACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGA 699094
Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123
| | || ||||| || | |||||||||||| | |||| ||||| ||| || ||
Sbjct 699093 AGGGTGTCAGGCATAAGGGGATGCCAGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGG 699034
Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182
|||||||||||||| | | ||| ||||| || || | |||| |||| || |
Sbjct 699033 TTTTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGATCAAACTTGAGCTTGAAGTT 698975
Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239
||||| || | ||||| || || | | || | | ||| || |||||||| || ||
Sbjct 698974 ATAGCCACTCAAATGCTGTACATAGT-CTTCAATCACAATCTTAATGGTTTCTCCTAT 698918
>seq42
Length=7019203
Score = 84.2 bits (92), Expect = 3e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| || ||| |||| || || || || ||||| |||||||||||| | ||||
Sbjct 2073158 TCTTGACAATGTTGAAACCCATTTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGGG 2073099
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| || ||| ||| | | || || |||||||| || |||||||| | || | || |
Sbjct 2073098 AACAAATGGGGTTTCCTAGAAGACCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 2073039
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || || || | ||| ||| || ||| || | | | || | ||| | ||||
Sbjct 2073038 TCTCCCCAAAAATAGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCA 2072979
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | || ||| || | || | | || || |||||||||||||||
Sbjct 2072978 TGGCGTCAATGTGTCCATACAACTCCTCCAACTTAGCTGCCATCTCCTTTTCTCCT 2072923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716824799549120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |