Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq216 150 3e-31 seq42 84.2 3e-11 >seq216 Length=3482710 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||||| |||| ||| |||||||||||| || ||||| || ||||| |||| Sbjct 698577 TGGTCTGGAACAAACGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACA 698518 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | ||||| ||||||| ||||| || |||| |||||||| || || || |||| ||| | Sbjct 698517 CTCTGTTATGTTCCCGTAGCCAAATGATGGCATACATCATCAGGCCTGGCACCATGCCGA 698458 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | |||| || || ||||| | | | || ||| || | | || || ||||||||| Sbjct 698457 AGACCTCATGCCCCACAGCAAAGTGTAGGTGTTCTGGGATATGTGGTGGGTAGATCATGG 698398 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| ||||||||| | ||| || |||| ||| || ||||| |||| Sbjct 698397 AGACCTGAGTGTCTTTGACTGTGGGAGGGTACACTTCTCCATCAATTATCT 698347 Score = 102 bits (112), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 9644 ATTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTC 9703 ||||| |||||||| || |||| |||||| ||||| || || ||| | ||| ||| Sbjct 697195 ATTGT-CTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTC 697137 Query 9704 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 9763 | || ||||| || || || || ||| |||| ||||||||||| | || ||||||||| Sbjct 697136 TTGAAGAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGG 697077 Query 9764 GGATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGC 9823 ||||| ||| |||| | | | || ||| ||||||||||| | | | ||| || Sbjct 697076 GGATCAGGAATGAACTTTTTTCTTAGGAGAAACTTTTCCACAACTTCTTTTGAATCAGGA 697017 Query 9824 AGCTTTGTTTTACCTG 9839 |||| | | || |||| Sbjct 697016 AGCTCTTTCTTCCCTG 697001 Score = 95.1 bits (104), Expect = 2e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| ||| |||| | |||| ||||| || | |||||||| || || | Sbjct 699213 CTTACCCTGCCAGCTCTTTGCCTGCTGAAAGATTCAACAAACTGGGTAAGTCCATGTTCC 699154 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | | |||||||||||||||| ||| | ||||| || | |||||||| | | Sbjct 699153 AGTAAGATGGAATTGTTGTAGAGGAACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGA 699094 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 | | || ||||| || | |||||||||||| | |||| ||||| ||| || || Sbjct 699093 AGGGTGTCAGGCATAAGGGGATGCCAGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGG 699034 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 |||||||||||||| | | ||| ||||| || || | |||| |||| || | Sbjct 699033 TTTTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGATCAAACTTGAGCTTGAAGTT 698975 Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239 ||||| || | ||||| || || | | || | | ||| || |||||||| || || Sbjct 698974 ATAGCCACTCAAATGCTGTACATAGT-CTTCAATCACAATCTTAATGGTTTCTCCTAT 698918 >seq42 Length=7019203 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || || ||||| |||||||||||| | |||| Sbjct 2073158 TCTTGACAATGTTGAAACCCATTTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGGG 2073099 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | || ||| ||| | | || || |||||||| || |||||||| | || | || | Sbjct 2073098 AACAAATGGGGTTTCCTAGAAGACCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 2073039 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || || || | ||| ||| || ||| || | | | || | ||| | |||| Sbjct 2073038 TCTCCCCAAAAATAGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCA 2072979 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | || ||| || | || | | || || ||||||||||||||| Sbjct 2072978 TGGCGTCAATGTGTCCATACAACTCCTCCAACTTAGCTGCCATCTCCTTTTCTCCT 2072923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716824799549120