Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq24 172 1e-37 seq802 120 7e-22 seq412 116 9e-21 seq39 111 4e-19 seq41 104 6e-17 seq951 100 7e-16 >seq24 Length=8999101 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||| |||||||| || |||||| Sbjct 2890723 CAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCAGAT 2890664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||| ||||| |||||||| || ||||| ||||||||| Sbjct 2890663 ACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAA 2890604 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||||| |||||||| ||||| | || || ||| | Sbjct 2890603 CGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAACATT 2890544 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || ||||| ||||||||||||||||| Sbjct 2890543 CAAAAGGAGTCCACACTTCATCTTGTTTTGAGACT 2890509 >seq802 Length=919857 Score = 120 bits (132), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| |||| || ||||| || || || ||||| || ||||| ||| |||||| Sbjct 2672 CAGATTTTCATGAAGACCCTCACTGGGAAGACAATCACACTAGAGGTCGAACCCTCAGAT 2731 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG---ACCAG 178040 || | ||||| || ||| ||||| |||| ||||||| || ||||| ||||| Sbjct 2732 ACTACAGAGAATGTGAAAGCCAAGATCTAGGATAAAGAAGACATTCCTCCTCCTAACCAG 2791 Query 178041 CAACGACTTATCTTC-GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| |||| || || || || | |||||| |||| || ||||| | | || || Sbjct 2792 CAAAGACTGATTTTTTGCTGGCATACAGCTGAAAGACGGGTCTACTCTGTCACACTAAAA 2851 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | | ||||| || || ||||| ||||||||||||||||| Sbjct 2852 CATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACT 2890 >seq412 Length=2039319 Score = 116 bits (128), Expect = 9e-21 Identities = 149/202 (74%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCA 177987 ||| |||| || || | || || || ||||||||||||||||| || ||| |||||| Sbjct 1106778 TTCATGAAGACCCTGATTGGTAAGACCATCACCCTCGAGGTGGA--GCCCAGTGACACCA 1106721 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 ||||||| ||||| |||||| |||||| | || || || || || |||||||| | | Sbjct 1106720 TCGAGAATGTCAAGGCAAAGATCCAGGAC-AGGAGGGCATACCCCCAGACCAGCAGAGGC 1106662 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| || || || ||||| ||||||||| | ||| | | || || || |||| | Sbjct 1106661 TGATCTTTGCTGGCAAGCAGCTGGAAGATGGATGCACTGTGTCTGACTACAAAATCCAGA 1106602 Query 178108 AAGAATCAACACTGCATCTTGT 178129 | || || || ||| | || || Sbjct 1106601 AGGAGTCCACCCTGTACCTGGT 1106580 >seq39 Length=7040410 Score = 111 bits (122), Expect = 4e-19 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || ||||| ||||| |||||||||| ||| || | Sbjct 3825813 CAGATCTTCGTGAAGACCCTGACCGGTAAAACCATCACTCTCGAGGTGG--AGCCCAGCG 3825870 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 3825871 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3825930 Query 178042 AACGACTTATCTTCGCCGG 178060 | | || ||||| ||||| Sbjct 3825931 AGAGGCTGATCTTTGCCGG 3825949 >seq41 Length=6870668 Score = 104 bits (114), Expect = 6e-17 Identities = 159/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || | || ||||| |||||||| || | Sbjct 2879834 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGAATGGCAAAACCATCACCCTGGAAG 2879778 Query 177970 TGGAAAGCTCA-GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC 178028 || ||| || || ||||||||||| || || |||| || || || ||||| ||| Sbjct 2879777 TG-AAACCTAGCGATACCATCGAGAATGTGAAGGCCAAGACCCA-GATAAGGAAGGCATC 2879720 Query 178029 CCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 | || |||||||| | || ||||| || || || ||||| ||||| | | |||||| Sbjct 2879719 C--CCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGACAGCTGCACTCTT 2879662 Query 178089 GCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| ||| |||| | ||| ||||| || || Sbjct 2879661 TCTGACTACAACAGCCAGGAAGAGTTAACCCTGCACCTGGT 2879621 >seq951 Length=571157 Score = 100 bits (110), Expect = 7e-16 Identities = 140/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || ||||| | |||||||| ||| |||||| | || |||| || ||| ||| Sbjct 473410 GGGAAGACGATAATGCTCGAGGTTGAACCCTCAGATCCTATATAGAATGTGAAAGCCAAG 473351 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC-GCCGGAAAACA 178066 || ||||| |||||||| || |||| ||||||||| |||| || || || || ||| Sbjct 473350 ATACAGGATAAAGAAGGGATTTCTCCTGACCAGCAA-GACTGATTTTTTGCTGGCAAATT 473292 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 ||| ||||||| ||||| || || |||||| |||| || | ||| | ||||| Sbjct 473291 GCTTGAAGATGAGCATACTCT----GACTACAACGTC-AAAAGGAGTTCACATTTCATCT 473237 Query 178127 TGTTTTGAGACT 178138 |||||||||||| Sbjct 473236 TGTTTTGAGACT 473225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203641701456782