Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq24 172 1e-37
seq802 120 7e-22
seq412 116 9e-21
seq39 111 4e-19
seq41 104 6e-17
seq951 100 7e-16
>seq24
Length=8999101
Score = 172 bits (190), Expect = 1e-37
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| || || || ||||| |||||||| || ||||||
Sbjct 2890723 CAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCAGAT 2890664
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| ||||| ||||| |||||||| || ||||| |||||||||
Sbjct 2890663 ACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAA 2890604
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||||| |||||||| ||||| | || || ||| |
Sbjct 2890603 CGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTACAACATT 2890544
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || ||||| |||||||||||||||||
Sbjct 2890543 CAAAAGGAGTCCACACTTCATCTTGTTTTGAGACT 2890509
>seq802
Length=919857
Score = 120 bits (132), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| |||| || ||||| || || || ||||| || ||||| ||| ||||||
Sbjct 2672 CAGATTTTCATGAAGACCCTCACTGGGAAGACAATCACACTAGAGGTCGAACCCTCAGAT 2731
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG---ACCAG 178040
|| | ||||| || ||| ||||| |||| ||||||| || ||||| |||||
Sbjct 2732 ACTACAGAGAATGTGAAAGCCAAGATCTAGGATAAAGAAGACATTCCTCCTCCTAACCAG 2791
Query 178041 CAACGACTTATCTTC-GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099
||| |||| || || || || | |||||| |||| || ||||| | | || ||
Sbjct 2792 CAAAGACTGATTTTTTGCTGGCATACAGCTGAAAGACGGGTCTACTCTGTCACACTAAAA 2851
Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
| | ||||| || || ||||| |||||||||||||||||
Sbjct 2852 CATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACT 2890
>seq412
Length=2039319
Score = 116 bits (128), Expect = 9e-21
Identities = 149/202 (74%), Gaps = 5/202 (2%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCA 177987
||| |||| || || | || || || ||||||||||||||||| || ||| ||||||
Sbjct 1106778 TTCATGAAGACCCTGATTGGTAAGACCATCACCCTCGAGGTGGA--GCCCAGTGACACCA 1106721
Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047
||||||| ||||| |||||| |||||| | || || || || || |||||||| | |
Sbjct 1106720 TCGAGAATGTCAAGGCAAAGATCCAGGAC-AGGAGGGCATACCCCCAGACCAGCAGAGGC 1106662
Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107
| ||||| || || || ||||| ||||||||| | ||| | | || || || |||| |
Sbjct 1106661 TGATCTTTGCTGGCAAGCAGCTGGAAGATGGATGCACTGTGTCTGACTACAAAATCCAGA 1106602
Query 178108 AAGAATCAACACTGCATCTTGT 178129
| || || || ||| | || ||
Sbjct 1106601 AGGAGTCCACCCTGTACCTGGT 1106580
>seq39
Length=7040410
Score = 111 bits (122), Expect = 4e-19
Identities = 109/139 (78%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || || || || ||||| ||||| |||||||||| ||| || |
Sbjct 3825813 CAGATCTTCGTGAAGACCCTGACCGGTAAAACCATCACTCTCGAGGTGG--AGCCCAGCG 3825870
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||||||||| || ||||| |||||||| || || ||||| || |||||||
Sbjct 3825871 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3825930
Query 178042 AACGACTTATCTTCGCCGG 178060
| | || ||||| |||||
Sbjct 3825931 AGAGGCTGATCTTTGCCGG 3825949
>seq41
Length=6870668
Score = 104 bits (114), Expect = 6e-17
Identities = 159/221 (72%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| |||||||| || || | || ||||| |||||||| || |
Sbjct 2879834 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGAATGGCAAAACCATCACCCTGGAAG 2879778
Query 177970 TGGAAAGCTCA-GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC 178028
|| ||| || || ||||||||||| || || |||| || || || ||||| |||
Sbjct 2879777 TG-AAACCTAGCGATACCATCGAGAATGTGAAGGCCAAGACCCA-GATAAGGAAGGCATC 2879720
Query 178029 CCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088
| || |||||||| | || ||||| || || || ||||| ||||| | | ||||||
Sbjct 2879719 C--CCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGACAGCTGCACTCTT 2879662
Query 178089 GCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || ||| ||| |||| | ||| ||||| || ||
Sbjct 2879661 TCTGACTACAACAGCCAGGAAGAGTTAACCCTGCACCTGGT 2879621
>seq951
Length=571157
Score = 100 bits (110), Expect = 7e-16
Identities = 140/192 (73%), Gaps = 7/192 (4%)
Strand=Plus/Minus
Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007
|| || ||||| | |||||||| ||| |||||| | || |||| || ||| |||
Sbjct 473410 GGGAAGACGATAATGCTCGAGGTTGAACCCTCAGATCCTATATAGAATGTGAAAGCCAAG 473351
Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC-GCCGGAAAACA 178066
|| ||||| |||||||| || |||| ||||||||| |||| || || || || |||
Sbjct 473350 ATACAGGATAAAGAAGGGATTTCTCCTGACCAGCAA-GACTGATTTTTTGCTGGCAAATT 473292
Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126
||| ||||||| ||||| || || |||||| |||| || | ||| | |||||
Sbjct 473291 GCTTGAAGATGAGCATACTCT----GACTACAACGTC-AAAAGGAGTTCACATTTCATCT 473237
Query 178127 TGTTTTGAGACT 178138
||||||||||||
Sbjct 473236 TGTTTTGAGACT 473225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203641701456782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |