Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq24 100 3e-16 seq412 95.1 1e-14 seq646 82.4 7e-11 >seq24 Length=8999101 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || ||||| || ||| |||||| |||||||| ||||| || || || || | || Sbjct 2890515 AAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATCT 2890574 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||| || || ||||| || || ||||| | |||| || || || ||| Sbjct 2890575 TCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCC 2890634 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || |||| | | ||| || | ||| ||||| | ||| || || Sbjct 2890635 TGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTC 2890694 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| |||||||||||||| || Sbjct 2890695 TTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq412 Length=2039319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| | ||| ||| ||||||||| || || ||||| || | |||| | || || Sbjct 1106580 ACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCC 1106639 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| ||||| | Sbjct 1106640 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGG 1106698 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||||||||| | || || || ||| Sbjct 1106699 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTA 1106758 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| | ||| |||||| Sbjct 1106759 CCAATCAGGGTCTTCATGAACTGCTGCAT 1106787 >seq646 Length=1375836 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||| || ||||||||| |||| || ||||||||||| || || ||| Sbjct 361737 TTCTGGATGTTGTAGTCCGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATC 361796 Query 41735 AGGCGCTGTTGGTCCGCGGG 41754 || ||||| ||||| | ||| Sbjct 361797 AGCCGCTGCTGGTCAGGGGG 361816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270465623600