Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq24 100 3e-16
seq412 95.1 1e-14
seq646 82.4 7e-11
>seq24
Length=8999101
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
|| || ||||| || ||| |||||| |||||||| ||||| || || || || | ||
Sbjct 2890515 AAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATCT 2890574
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| ||||||||||| || || ||||| || || ||||| | |||| || || || |||
Sbjct 2890575 TCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATCC 2890634
Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
||| || |||| | | ||| || | ||| ||||| | ||| || ||
Sbjct 2890635 TGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGTC 2890694
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| |||||||||||||| ||
Sbjct 2890695 TTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq412
Length=2039319
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| | ||| ||| ||||||||| || || ||||| || | |||| | || ||
Sbjct 1106580 ACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCATCCATCTTCC 1106639
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || ||||| | ||| ||||| | ||| | || |||| ||||| |
Sbjct 1106640 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC-TGTCCTGG 1106698
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| ||| ||| | | | ||||| || | ||||||||| | || || || |||
Sbjct 1106699 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTA 1106758
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||||| | ||| ||||||
Sbjct 1106759 CCAATCAGGGTCTTCATGAACTGCTGCAT 1106787
>seq646
Length=1375836
Score = 82.4 bits (90), Expect = 7e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||| ||||| ||||| || ||||||||| |||| || ||||||||||| || || |||
Sbjct 361737 TTCTGGATGTTGTAGTCCGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATC 361796
Query 41735 AGGCGCTGTTGGTCCGCGGG 41754
|| ||||| ||||| | |||
Sbjct 361797 AGCCGCTGCTGGTCAGGGGG 361816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462270465623600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |